Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0498(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU0498
|Gene||Common Name||Description||Module membership|
|GSU0376||gcvH-1||glycine cleavage system H protein (NCBI)||153, 296|
|GSU0377||GSU0377||glycine cleavage system P protein, subunit 1 (VIMSS)||153, 296|
|GSU0378||GSU0378||glycine cleavage system P protein, subunit 2 (VIMSS)||153, 296|
|GSU0379||GSU0379||biotin/lipoate A/B protein ligase family protein (NCBI)||153, 296|
|GSU0380||lipA||lipoic acid synthetase (NCBI)||153, 296|
|GSU0382||GSU0382||conserved hypothetical protein (VIMSS)||153, 296|
|GSU0435||GSU0435||MSHA biogenesis protein MshE, putative (VIMSS)||79, 272|
|GSU0498||GSU0498||hypothetical protein (VIMSS)||153, 272|
|GSU0750||GSU0750||methyl-accepting chemotaxis protein, putative (VIMSS)||25, 153|
|GSU0766||GSU0766||methyl-accepting chemotaxis protein, putative (VIMSS)||82, 272|
|GSU0900||GSU0900||hypothetical protein (VIMSS)||79, 272|
|GSU0947||GSU0947||ABC transporter, ATP-binding protein (VIMSS)||272, 293|
|GSU0970||GSU0970||conserved hypothetical protein (VIMSS)||153, 253|
|GSU0971||prfA||peptidyl-tRNA hydrolase domain protein (NCBI)||153, 178|
|GSU1049||GSU1049||conserved hypothetical protein (NCBI)||21, 272|
|GSU1050||GSU1050||sensory box histidine kinase (VIMSS)||21, 272|
|GSU1052||GSU1052||hydrolase, alpha/beta fold family (VIMSS)||122, 153|
|GSU1054||GSU1054||conserved hypothetical protein (VIMSS)||34, 153|
|GSU1055||GSU1055||membrane protein, putative (VIMSS)||78, 153|
|GSU1145||cheB-2||protein-glutamate methylesterase (NCBI)||241, 272|
|GSU1322||ccdA||cytochrome c biogenesis protein CcdA (NCBI)||153, 214|
|GSU1342||GSU1342||transcriptional regulator, LysR family (VIMSS)||127, 272|
|GSU1343||GSU1343||isochorismatase family protein (NCBI)||127, 272|
|GSU1555||GSU1555||sensory box histidine kinase/response regulator (VIMSS)||153, 214|
|GSU1571||GSU1571||conserved domain protein (NCBI)||121, 153|
|GSU1618||GSU1618||hypothetical protein (VIMSS)||59, 272|
|GSU1620||GSU1620||iron-sulfur cluster binding protein, putative (VIMSS)||59, 272|
|GSU1621||GSU1621||conserved domain protein (VIMSS)||59, 272|
|GSU1622||GSU1622||L-lactate permease (VIMSS)||59, 272|
|GSU1623||GSU1623||glycolate oxidase subunit GlcD, putative (VIMSS)||59, 272|
|GSU1624||GSU1624||glycolate oxidase iron-sulfur subunit, putative (NCBI)||59, 272|
|GSU2124||GSU2124||thioredoxin-related domain protein (VIMSS)||78, 153|
|GSU2157||nrd||conserved domain protein (NCBI)||70, 153|
|GSU2161||GSU2161||hypothetical protein (VIMSS)||78, 153|
|GSU2340||GSU2340||Na+/H+ ion antiporter family protein (NCBI)||153, 225|
|GSU2511||GSU2511||sensory box/GGDEF family protein (VIMSS)||272, 337|
|GSU2588||lpdA-2||alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase (NCBI)||75, 153|
|GSU2992||cobQ||cobyric acid synthase (NCBI)||89, 153|
|GSU2994||cobM||precorrin-4 C11-methyltransferase (NCBI)||153, 156|
|GSU3023||GSU3023||glycosyl transferase, group 1/2 family protein (VIMSS)||78, 272|
|GSU3025||GSU3025||heptosyltransferase family protein (VIMSS)||27, 272|
|GSU3027||GSU3027||chemotaxis MotA protein (VIMSS)||153, 286|
|GSU3156||GSU3156||methyl-accepting chemotaxis protein, putative (VIMSS)||16, 153|
|GSU3162||GSU3162||L-allo-threonine aldolase (VIMSS)||148, 153|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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