Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1015(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1015
|Gene||Common Name||Description||Module membership|
|GSU0062||GSU0062||TraD protein, putative (VIMSS)||189, 319|
|GSU0122||GSU0122||nickel-dependent hydrogenase, large subunit (VIMSS)||21, 157|
|GSU0150||argB||acetylglutamate kinase (NCBI)||107, 189|
|GSU0206||GSU0206||ZIP zinc transporter family protein (VIMSS)||189, 206|
|GSU0218||GSU0218||conserved hypothetical protein (VIMSS)||21, 266|
|GSU0231||GSU0231||hypothetical protein (VIMSS)||189, 224|
|GSU0265||GSU0265||membrane protein, putative (VIMSS)||21, 186|
|GSU0330||GSU0330||general secretion pathway protein C, putative (NCBI)||173, 189|
|GSU0428||GSU0428||lipoprotein, putative (VIMSS)||21, 278|
|GSU0433||GSU0433||clpB protein, putative (NCBI)||21, 96|
|GSU0837||GSU0837||response regulator (VIMSS)||21, 155|
|GSU0848||GSU0848||ferredoxin family protein, putative (VIMSS)||21, 189|
|GSU0849||GSU0849||conserved hypothetical protein (VIMSS)||21, 157|
|GSU1015||GSU1015||hypothetical protein (VIMSS)||21, 189|
|GSU1035||GSU1035||methyl-accepting chemotaxis protein (NCBI)||57, 189|
|GSU1049||GSU1049||conserved hypothetical protein (NCBI)||21, 272|
|GSU1050||GSU1050||sensory box histidine kinase (VIMSS)||21, 272|
|GSU1056||GSU1056||conserved hypothetical protein TIGR00149 (VIMSS)||21, 133|
|GSU1057||GSU1057||hypothetical protein (VIMSS)||21, 133|
|GSU1058||sucC||succinyl-CoA synthase, beta subunit (NCBI)||21, 133|
|GSU1065||GSU1065||hypothetical protein (VIMSS)||173, 189|
|GSU1085||GSU1085||hypothetical protein (VIMSS)||57, 189|
|GSU1142||cheW-3||purine-binding chemotaxis protein CheW (NCBI)||189, 241|
|GSU1163||GSU1163||ABC transporter, permease protein (VIMSS)||189, 266|
|GSU1220||GSU1220||response regulator (VIMSS)||189, 336|
|GSU1395||GSU1395||hypothetical protein (VIMSS)||57, 189|
|GSU1415||GSU1415||response regulator (VIMSS)||21, 157|
|GSU1577||cobO||cob(I)alamin adenosyltransferase (NCBI)||189, 231|
|GSU1685||GSU1685||HD domain protein (NCBI)||21, 38|
|GSU1942||GSU1942||UDP-glucose/GDP-mannose dehydrogenase family protein (VIMSS)||189, 319|
|GSU2013||GSU2013||phosphoglucomutase/phosphomannomutase family protein (VIMSS)||55, 189|
|GSU2118||GSU2118||integrative genetic element Gsu21, integrase (VIMSS)||189, 307|
|GSU2137||GSU2137||metal ion efflux outer membrane protein family protein, putative (VIMSS)||110, 189|
|GSU2175||GSU2175||trfA-related protein (VIMSS)||71, 189|
|GSU2302||GSU2302||trehalose-phosphatase, putative (VIMSS)||20, 189|
|GSU2349||GSU2349||hypothetical protein (VIMSS)||21, 45|
|GSU2386||GSU2386||methylcobamide:CoM methyltransferase-related protein (NCBI)||189, 266|
|GSU2393||GSU2393||ISGsu5, transposase, truncation (VIMSS)||121, 189|
|GSU2512||GSU2512||hypothetical protein (VIMSS)||21, 180|
|GSU2719||hoxY||NAD-reducing hydrogenase, delta subunit (NCBI)||189, 224|
|GSU3116||GSU3116||1-acyl-sn-glycerol-3-phosphate acyltransferase, putative (NCBI)||81, 189|
|GSU3198||cheY-7||chemotaxis protein CheY (NCBI)||189, 326|
|GSU3202||GSU3202||hypothetical protein (VIMSS)||189, 326|
|GSU3364||GSU3364||hypothetical protein (VIMSS)||81, 189|
|GSU3415||GSU3415||radical SAM domain protein/B12 binding domain protein (NCBI)||21, 157|
|GSU3417||GSU3417||dioxygenase, putative (VIMSS)||21, 59|
|GSU3418||GSU3418||sigma-54 dependent DNA-binding response regulator (VIMSS)||21, 274|
|GSU3428||GSU3428||cytochrome c family protein, putative (NCBI)||189, 318|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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