Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1715(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1715
|Gene||Common Name||Description||Module membership|
|GSU0105||GSU0105||cytochrome c family protein, putative (NCBI)||180, 181|
|GSU0107||spo0J||parB-like domain protein (NCBI)||147, 181|
|GSU0422||fliN||flagellar motor switch protein FliN (NCBI)||181, 234|
|GSU0462||GSU0462||peptidase, M48 family (NCBI)||51, 63|
|GSU0463||GSU0463||membrane protein, putative (VIMSS)||36, 51|
|GSU0515||GSU0515||universal stress protein family (VIMSS)||69, 181|
|GSU0702||GSU0702||cytochrome c family protein (VIMSS)||51, 76|
|GSU0758||GSU0758||membrane protein, putative (VIMSS)||181, 278|
|GSU0877||GSU0877||response regulator (VIMSS)||51, 76|
|GSU1039||GSU1039||sigma-54 dependent DNA-binding response regulator (VIMSS)||181, 269|
|GSU1047||GSU1047||conserved hypothetical protein (VIMSS)||181, 253|
|GSU1114||GSU1114||TPR domain protein (VIMSS)||181, 267|
|GSU1155||GSU1155||glutaredoxin family protein (VIMSS)||51, 293|
|GSU1181||GSU1181||hypothetical protein (VIMSS)||176, 181|
|GSU1202||rfbA||mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, truncation (NCBI)||51, 144|
|GSU1216||cydC||transport ATP-binding protein CydC (NCBI)||8, 181|
|GSU1222||GSU1222||histone deacetylase/AcuC/AphA family protein (VIMSS)||106, 181|
|GSU1240||GSU1240||hypothetical protein (VIMSS)||176, 181|
|GSU1281||nikO||component of nickel ABC transport system (Dmitry Rodionov)||181, 278|
|GSU1310||GSU1310||pyridine nucleotide-disulfide oxidoreductase (Regina ONeil)||181, 205|
|GSU1319||GSU1319||sensor histidine kinase (VIMSS)||106, 181|
|GSU1446||GSU1446||radical SAM domain protein (NCBI)||181, 207|
|GSU1491||GSU1491||type IV pilus biogenesis protein PilB (VIMSS)||51, 75|
|GSU1545||GSU1545||transporter, LysE family (VIMSS)||181, 338|
|GSU1564||GSU1564||Glu/Leu/Phe/Val dehydrogenase family protein (NCBI)||51, 76|
|GSU1572||GSU1572||ribD domain protein (NCBI)||51, 79|
|GSU1573||GSU1573||CAAX amino terminal protease family protein (NCBI)||181, 253|
|GSU1643||pleD||GGDEF/response regulator receiver domain protein (NCBI)||51, 293|
|GSU1679||GSU1679||hypothetical protein (VIMSS)||51, 249|
|GSU1715||GSU1715||hypothetical protein (VIMSS)||51, 181|
|GSU1740||GSU1740||cytochrome c family protein, putative (VIMSS)||69, 181|
|GSU2116||GSU2116||hypothetical protein (VIMSS)||181, 253|
|GSU2117||GSU2117||hypothetical protein (VIMSS)||181, 278|
|GSU2131||GSU2131||hypothetical protein (VIMSS)||51, 66|
|GSU2163||GSU2163||hypothetical protein (VIMSS)||181, 278|
|GSU2177||GSU2177||hypothetical protein (VIMSS)||113, 181|
|GSU2194||guaA||GMP synthase (NCBI)||51, 201|
|GSU2216||GSU2216||PBS lyase HEAT-like repeat protein (NCBI)||51, 293|
|GSU2224||GSU2224||response regulator (VIMSS)||51, 201|
|GSU2293||GSU2293||hypothetical protein (VIMSS)||181, 338|
|GSU2297||GSU2297||sensory box histidine kinase (VIMSS)||71, 181|
|GSU2312||GSU2312||sulfate transporter family protein (VIMSS)||130, 181|
|GSU2377||GSU2377||hypothetical protein (VIMSS)||51, 158|
|GSU2450||GSU2450||conserved hypothetical protein (VIMSS)||51, 59|
|GSU2453||GSU2453||membrane protein, putative (VIMSS)||51, 79|
|GSU2472||vapC||virulence associated protein C (NCBI)||181, 193|
|GSU2474||GSU2474||hypothetical protein (VIMSS)||88, 181|
|GSU2540||GSU2540||transcriptional regulator, Cro/CI family (VIMSS)||181, 304|
|GSU2554||GSU2554||conserved hypothetical protein (VIMSS)||51, 231|
|GSU2664||GSU2664||outer membrane efflux protein (VIMSS)||181, 244|
|GSU2773||GSU2773||conserved domain protein (VIMSS)||51, 179|
|GSU2927||GSU2927||cytochrome c, putative (NCBI)||181, 327|
|GSU2995||cobI||precorrin-2 C20-methyltransferase (NCBI)||51, 76|
|GSU3171||GSU3171||conserved domain protein (NCBI)||51, 103|
|GSU3184||GSU3184||hypothetical protein (VIMSS)||181, 300|
|GSU3250||pcnB||polyA polymerase (NCBI)||51, 73|
|GSU3309||GSU3309||conserved hypothetical protein (VIMSS)||51, 121|
|GSU3361||GSU3361||transglutaminase domain protein (NCBI)||180, 181|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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