Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1573(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1573
|Gene||Common Name||Description||Module membership|
|GSU0105||GSU0105||cytochrome c family protein, putative (NCBI)||180, 181|
|GSU0107||spo0J||parB-like domain protein (NCBI)||147, 181|
|GSU0227||GSU0227||type II DNA modification methyltransferase, putative (NCBI)||164, 253|
|GSU0250||GSU0250||conserved hypothetical protein (VIMSS)||25, 253|
|GSU0279||GSU0279||cadherin domain/calx-beta domain protein (NCBI)||45, 253|
|GSU0289||GSU0289||conserved hypothetical protein (VIMSS)||8, 253|
|GSU0422||fliN||flagellar motor switch protein FliN (NCBI)||181, 234|
|GSU0474||GSU0474||sensory box/GGDEF family protein (VIMSS)||40, 253|
|GSU0515||GSU0515||universal stress protein family (VIMSS)||69, 181|
|GSU0566||GSU0566||glutaredoxin family protein (NCBI)||47, 253|
|GSU0621||GSU0621||hypothetical protein (NCBI)||60, 253|
|GSU0758||GSU0758||membrane protein, putative (VIMSS)||181, 278|
|GSU0853||GSU0853||CBS domain protein (VIMSS)||65, 253|
|GSU0863||GSU0863||conserved hypothetical protein (VIMSS)||57, 253|
|GSU0970||GSU0970||conserved hypothetical protein (VIMSS)||153, 253|
|GSU1009||hflX||GTP-binding protein (NCBI)||164, 253|
|GSU1039||GSU1039||sigma-54 dependent DNA-binding response regulator (VIMSS)||181, 269|
|GSU1047||GSU1047||conserved hypothetical protein (VIMSS)||181, 253|
|GSU1114||GSU1114||TPR domain protein (VIMSS)||181, 267|
|GSU1181||GSU1181||hypothetical protein (VIMSS)||176, 181|
|GSU1190||GSU1190||conserved hypothetical protein (VIMSS)||46, 253|
|GSU1216||cydC||transport ATP-binding protein CydC (NCBI)||8, 181|
|GSU1222||GSU1222||histone deacetylase/AcuC/AphA family protein (VIMSS)||106, 181|
|GSU1240||GSU1240||hypothetical protein (VIMSS)||176, 181|
|GSU1281||nikO||component of nickel ABC transport system (Dmitry Rodionov)||181, 278|
|GSU1310||GSU1310||pyridine nucleotide-disulfide oxidoreductase (Regina ONeil)||181, 205|
|GSU1319||GSU1319||sensor histidine kinase (VIMSS)||106, 181|
|GSU1446||GSU1446||radical SAM domain protein (NCBI)||181, 207|
|GSU1545||GSU1545||transporter, LysE family (VIMSS)||181, 338|
|GSU1548||GSU1548||hypothetical protein (VIMSS)||40, 253|
|GSU1562||GSU1562||conserved hypothetical protein TIGR00106 (VIMSS)||164, 253|
|GSU1573||GSU1573||CAAX amino terminal protease family protein (NCBI)||181, 253|
|GSU1715||GSU1715||hypothetical protein (VIMSS)||51, 181|
|GSU1740||GSU1740||cytochrome c family protein, putative (VIMSS)||69, 181|
|GSU1770||GSU1770||hypothetical protein (VIMSS)||133, 253|
|GSU2082||GSU2082||conserved hypothetical protein (VIMSS)||253, 321|
|GSU2116||GSU2116||hypothetical protein (VIMSS)||181, 253|
|GSU2117||GSU2117||hypothetical protein (VIMSS)||181, 278|
|GSU2159||GSU2159||hypothetical protein (VIMSS)||6, 253|
|GSU2163||GSU2163||hypothetical protein (VIMSS)||181, 278|
|GSU2177||GSU2177||hypothetical protein (VIMSS)||113, 181|
|GSU2293||GSU2293||hypothetical protein (VIMSS)||181, 338|
|GSU2297||GSU2297||sensory box histidine kinase (VIMSS)||71, 181|
|GSU2312||GSU2312||sulfate transporter family protein (VIMSS)||130, 181|
|GSU2472||vapC||virulence associated protein C (NCBI)||181, 193|
|GSU2474||GSU2474||hypothetical protein (VIMSS)||88, 181|
|GSU2540||GSU2540||transcriptional regulator, Cro/CI family (VIMSS)||181, 304|
|GSU2664||GSU2664||outer membrane efflux protein (VIMSS)||181, 244|
|GSU2750||GSU2750||conserved domain protein (VIMSS)||57, 253|
|GSU2772||GSU2772||ISGsu3, transposase (VIMSS)||84, 253|
|GSU2927||GSU2927||cytochrome c, putative (NCBI)||181, 327|
|GSU2930||GSU2930||cytochrome c family protein (VIMSS)||253, 321|
|GSU3118||regX3||DNA-binding response regulator (NCBI)||253, 278|
|GSU3184||GSU3184||hypothetical protein (VIMSS)||181, 300|
|GSU3361||GSU3361||transglutaminase domain protein (NCBI)||180, 181|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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