Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU3361(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU3361
|Gene||Common Name||Description||Module membership|
|GSU0105||GSU0105||cytochrome c family protein, putative (NCBI)||180, 181|
|GSU0107||spo0J||parB-like domain protein (NCBI)||147, 181|
|GSU0282||GSU0282||hypothetical protein (VIMSS)||36, 180|
|GSU0422||fliN||flagellar motor switch protein FliN (NCBI)||181, 234|
|GSU0515||GSU0515||universal stress protein family (VIMSS)||69, 181|
|GSU0758||GSU0758||membrane protein, putative (VIMSS)||181, 278|
|GSU0763||GSU0763||helicase, putative (NCBI)||130, 180|
|GSU0831||GSU0831||nitrogen regulatory protein P-II, putative (VIMSS)||27, 180|
|GSU0833||GSU0833||hypothetical protein (VIMSS)||180, 278|
|GSU1039||GSU1039||sigma-54 dependent DNA-binding response regulator (VIMSS)||181, 269|
|GSU1047||GSU1047||conserved hypothetical protein (VIMSS)||181, 253|
|GSU1114||GSU1114||TPR domain protein (VIMSS)||181, 267|
|GSU1181||GSU1181||hypothetical protein (VIMSS)||176, 181|
|GSU1214||GSU1214||tetracenomycin polyketide synthesis 8-o-methyltransferase, putative (NCBI)||148, 180|
|GSU1216||cydC||transport ATP-binding protein CydC (NCBI)||8, 181|
|GSU1222||GSU1222||histone deacetylase/AcuC/AphA family protein (VIMSS)||106, 181|
|GSU1240||GSU1240||hypothetical protein (VIMSS)||176, 181|
|GSU1281||nikO||component of nickel ABC transport system (Dmitry Rodionov)||181, 278|
|GSU1302||GSU1302||sensor histidine kinase/response regulator (VIMSS)||79, 180|
|GSU1310||GSU1310||pyridine nucleotide-disulfide oxidoreductase (Regina ONeil)||181, 205|
|GSU1319||GSU1319||sensor histidine kinase (VIMSS)||106, 181|
|GSU1446||GSU1446||radical SAM domain protein (NCBI)||181, 207|
|GSU1542||GSU1542||transcriptional regulator, Cro/CI family (VIMSS)||180, 235|
|GSU1545||GSU1545||transporter, LysE family (VIMSS)||181, 338|
|GSU1573||GSU1573||CAAX amino terminal protease family protein (NCBI)||181, 253|
|GSU1581||GSU1581||polyA polymerase family protein (NCBI)||130, 180|
|GSU1715||GSU1715||hypothetical protein (VIMSS)||51, 181|
|GSU1740||GSU1740||cytochrome c family protein, putative (VIMSS)||69, 181|
|GSU2116||GSU2116||hypothetical protein (VIMSS)||181, 253|
|GSU2117||GSU2117||hypothetical protein (VIMSS)||181, 278|
|GSU2163||GSU2163||hypothetical protein (VIMSS)||181, 278|
|GSU2177||GSU2177||hypothetical protein (VIMSS)||113, 181|
|GSU2293||GSU2293||hypothetical protein (VIMSS)||181, 338|
|GSU2297||GSU2297||sensory box histidine kinase (VIMSS)||71, 181|
|GSU2312||GSU2312||sulfate transporter family protein (VIMSS)||130, 181|
|GSU2374||GSU2374||hypothetical protein (VIMSS)||63, 180|
|GSU2472||vapC||virulence associated protein C (NCBI)||181, 193|
|GSU2474||GSU2474||hypothetical protein (VIMSS)||88, 181|
|GSU2512||GSU2512||hypothetical protein (VIMSS)||21, 180|
|GSU2532||GSU2532||conserved hypothetical protein (VIMSS)||180, 283|
|GSU2540||GSU2540||transcriptional regulator, Cro/CI family (VIMSS)||181, 304|
|GSU2658||GSU2658||lipoprotein, putative (VIMSS)||180, 337|
|GSU2664||GSU2664||outer membrane efflux protein (VIMSS)||181, 244|
|GSU2679||GSU2679||conserved hypothetical protein (VIMSS)||155, 180|
|GSU2774||GSU2774||hypothetical protein (VIMSS)||180, 232|
|GSU2927||GSU2927||cytochrome c, putative (NCBI)||181, 327|
|GSU3119||GSU3119||sensor histidine kinase (VIMSS)||180, 278|
|GSU3180||GSU3180||conserved hypothetical protein (VIMSS)||1, 180|
|GSU3184||GSU3184||hypothetical protein (VIMSS)||181, 300|
|GSU3361||GSU3361||transglutaminase domain protein (NCBI)||180, 181|
|GSU3426||GSU3426||hypothetical protein (VIMSS)||148, 180|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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