Organism : Halobacterium salinarum NRC-1 | Module List :
hypothetical protein VNG0540G
Functional Annotations (2)
|TRAP-type uncharacterized transport system, periplasmic component||cog/ cog|
Regulation information for VNG0540G(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for VNG0540G
|TRAP-type uncharacterized transport system, periplasmic component||cog/ cog|
Module neighborhood information for VNG0540G
|Gene||Common Name||Description||Module membership|
|VNG0043H||hypothetical protein VNG0043H||45, 114|
|VNG0102C||hypothetical protein VNG0102C||119|
|VNG0404H||hypothetical protein VNG0404H||119|
|VNG0540G||imp||hypothetical protein VNG0540G||114, 119|
|VNG0578H||hypothetical protein VNG0578H||119|
|VNG0583G||cyb||cytochrome b6||119, 283|
|VNG0965C||hypothetical protein VNG0965C||119|
|VNG1309G||sdhD||membrane anchor||119, 236|
|VNG1542G||sucD||hypothetical protein VNG1542G||33, 45, 67, 114, 124|
|VNG1543G||zim||CTAG modification methylase||114, 124, 174, 184|
|VNG1550G||cbiT||cobalamin biosynthesis protein||45, 67, 114, 227|
|VNG1551G||cbiL||cobalt-precorrin-2 C(20)-methyltransferase||45, 67, 114, 124, 227|
|VNG1553G||cbiF||cobalamin biosynthesis protein||45, 114, 227|
|VNG1554G||cbiG||cobalamin biosynthesis protein CbiG||45, 61, 67, 114, 124, 227|
|VNG1557G||cbiH||cobalamin biosynthesis protein||45, 61, 67, 114, 124, 174, 227|
|VNG1558H||hypothetical protein VNG1558H||45, 61, 67, 114, 124, 174, 227|
|VNG1559H||hypothetical protein VNG1559H||45, 114, 124, 174, 227|
|VNG1562H||hypothetical protein VNG1562H||45, 114, 124, 174, 205, 227|
|VNG1564H||hypothetical protein VNG1564H||114, 124, 174, 205, 226, 227|
|VNG1567G||cbiC||precorrin isomerase||61, 114, 124|
|VNG1568G||cbiJ||cobalt-precorrin-6Y C(5)-methyltransferase||61, 114, 124|
|VNG1632G||cbiQ||hypothetical protein VNG1632G||76, 114, 163, 174, 205, 226, 227|
|VNG1668G||rps8e||30S ribosomal protein S8e||119|
|VNG2089H||hypothetical protein VNG2089H||119|
|VNG2138G||atpB||V-type ATP synthase subunit B||45, 67, 114, 124, 227|
|VNG2139G||atpA||V-type ATP synthase subunit A||23, 24, 33, 39, 45, 67, 114, 124, 227|
|VNG2140G||atpF||V-type ATP synthase subunit F||33, 39, 45, 67, 114, 124, 227|
|VNG2141G||atpC||V-type ATP synthase subunit C||23, 39, 45, 67, 114, 124, 227|
|VNG2142G||atpE||V-type ATP synthase subunit E||19, 24, 45, 67, 114, 227|
|VNG2143G||atpK||H+-transporting ATP synthase subunit K||2, 19, 23, 24, 45, 67, 75, 114, 124, 227|
|VNG2339C||hypothetical protein VNG2339C||119|
|VNG2372G||rad24c||DNA repair protein||119|
|VNG2402H||hypothetical protein VNG2402H||119|
|VNG2459G||srp54||signal recognition particle||119|
|VNG2472G||nifU||hypothetical protein VNG2472G||119|
|VNG2585H||hypothetical protein VNG2585H||119|
|VNG6081G||crt_1||isopentenyl pyrophosphate isomerase||114|
|VNG6255C||hypothetical protein VNG6255C||119|
|VNG6256G||lipB||lipoate protein ligase||119|
|VNG6309G||pyrB||aspartate carbamoyltransferase catalytic subunit||119|
|VNG7020||gvpH||gas vesicle protein GvpH||119|
|VNG7040||cydB||cytochrome d ubiquinol oxidase subunit II||119|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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