Organism : Halobacterium salinarum NRC-1 | Module List :
Regulation information for VNG0906H(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for VNG0906H
|Gene||Common Name||Description||Module membership|
|VNG0192G||ftsZ2||cell division protein FtsZ||2, 3, 7, 12, 16, 49, 50, 71, 78, 79, 123|
|VNG0194H||hypothetical protein VNG0194H||3, 7, 12, 16, 50, 79, 123|
|VNG0207H||hypothetical protein VNG0207H||2, 3, 7, 12, 16, 49, 67, 71, 78, 79, 113, 123|
|VNG0208H||hypothetical protein VNG0208H||2, 3, 7, 12, 16, 24, 29, 49, 67, 71, 78, 79, 113, 123|
|VNG0209H||hypothetical protein VNG0209H||2, 3, 7, 12, 16, 24, 29, 49, 67, 71, 78, 79, 113, 123|
|VNG0258H||hypothetical protein VNG0258H||3, 12, 16, 49, 79, 100, 109, 150|
|VNG0259G||ipp||inorganic pyrophosphatase||7, 12, 16, 79, 109|
|VNG0261H||hypothetical protein VNG0261H||7, 12, 16, 25, 49, 50, 55, 79, 109, 113|
|VNG0262C||hypothetical protein VNG0262C||12, 25, 49, 50, 55, 79, 109, 113|
|VNG0524G||yurY||ABC transporter ATP-binding protein||2, 3, 7, 12, 16, 71, 113, 225|
|VNG0525C||hypothetical protein VNG0525C||7, 12, 71, 78, 113, 225|
|VNG0527C||hypothetical protein VNG0527C||2, 3, 7, 12, 16, 71, 78, 79, 113, 123, 225|
|VNG0579H||hypothetical protein VNG0579H||49, 79, 123, 187|
|VNG0586C||hypothetical protein VNG0586C||79, 187|
|VNG0768H||hypothetical protein VNG0768H||71, 283|
|VNG0801C||hypothetical protein VNG0801C||12, 49, 71, 79, 113, 187|
|VNG0880G||psmA||proteasome subunit alpha||12, 49, 71, 79, 109|
|VNG0906H||hypothetical protein VNG0906H||71, 79|
|VNG0960G||flaB1||flagellin B1||2, 3, 7, 12, 16, 49, 78, 79, 100, 113, 123|
|VNG0961G||flaB2||flagellin B2||2, 3, 7, 12, 16, 49, 78, 79, 100, 113, 123, 291|
|VNG0963G||cpcE||phycocyanin alpha phycocyanobilin lyase-like protein||12, 79|
|VNG0999H||hypothetical protein VNG0999H||79, 187|
|VNG1092C||hypothetical protein VNG1092C||71, 187|
|VNG1093C||hypothetical protein VNG1093C||71, 79, 187|
|VNG1128G||korA||KorA||3, 7, 12, 24, 29, 49, 71, 78, 113|
|VNG1189H||hypothetical protein VNG1189H||79, 187|
|VNG1306G||sdhA||hypothetical protein VNG1306G||2, 3, 12, 16, 78, 79, 90, 100|
|VNG1376H||hypothetical protein VNG1376H||71|
|VNG1412H||hypothetical protein VNG1412H||3, 12, 49, 71, 79, 113|
|VNG1836G||cspD2||cold shock protein||3, 12, 49, 71, 79|
|VNG2006C||hypothetical protein VNG2006C||79, 113, 170, 187|
|VNG2008H||hypothetical protein VNG2008H||9, 49, 79, 113, 170, 187|
|VNG2044H||hypothetical protein VNG2044H||79, 187|
|VNG2122G||ilvE2||branched-chain amino acid aminotransferase||7, 19, 29, 49, 71, 75, 78|
|VNG2251G||achY||S-adenosyl-L-homocysteine hydrolase||24, 29, 49, 71, 79, 113|
|VNG2443G||dpsA||starvation induced DNA-binding protein||3, 12, 49, 71, 79, 113, 123, 187|
|VNG2543C||hypothetical protein VNG2543C||3, 12, 49, 71, 78, 113, 156|
|VNG2649G||eef1a||elongation factor 1-alpha||2, 3, 16, 24, 29, 40, 79, 110|
|VNG6201G||hsp5||heat shock protease protein||3, 49, 71, 79, 98, 100, 113, 187, 240|
|VNG7101||hypothetical protein VNG7101||49, 71, 113|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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