Organism : Halobacterium salinarum NRC-1 | Module List :
Regulation information for VNG5175H(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 6 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for VNG5175H
|Gene||Common Name||Description||Module membership|
|VNG0316C||hypothetical protein VNG0316C||42, 68|
|VNG0430H||hypothetical protein VNG0430H||42, 68, 151|
|VNG0462C||hypothetical protein VNG0462C||42, 57, 68, 151, 162, 246|
|VNG0819C||hypothetical protein VNG0819C||42|
|VNG0836H||hypothetical protein VNG0836H||42, 68|
|VNG0858C||hypothetical protein VNG0858C||68|
|VNG0870G||gatC||hypothetical protein VNG0870G||42, 68|
|VNG0988H||hypothetical protein VNG0988H||42, 68, 107, 203, 207, 210|
|VNG1270H||hypothetical protein VNG1270H||18, 30, 37, 42|
|VNG1362H||hypothetical protein VNG1362H||68|
|VNG1777H||hypothetical protein VNG1777H||192, 230, 234|
|VNG1779C||hypothetical protein VNG1779C||44, 131, 230, 234|
|VNG1784C||DNA primase||28, 42, 68, 83, 234|
|VNG1811G||eye||succinoglycan biosynthesis||42, 68, 179, 286|
|VNG1815G||carA||carbamoyl phosphate synthase small subunit||68, 86, 209, 257, 294, 298|
|VNG1816G||trh3||transcription regulator||68, 86, 139, 209, 238, 257, 298|
|VNG1818G||idi||Idi||68, 86, 209, 214, 234, 257|
|VNG1859G||deoC||hypothetical protein VNG1859G||42, 68|
|VNG1872C||hypothetical protein VNG1872C||42, 68, 186|
|VNG1886C||hypothetical protein VNG1886C||42, 68|
|VNG1891H||hypothetical protein VNG1891H||14, 42, 68, 135|
|VNG1893G||trp2||ABC transport protein||14, 42|
|VNG1894C||hypothetical protein VNG1894C||14, 42|
|VNG1921H||hypothetical protein VNG1921H||68|
|VNG1952H||hypothetical protein VNG1952H||18, 28, 30, 42, 68, 80, 91, 108, 121, 135|
|VNG1953C||hypothetical protein VNG1953C||13, 18, 30, 34, 42, 80, 91, 108, 115, 121|
|VNG1956H||hypothetical protein VNG1956H||18, 30, 34, 42, 80, 91, 108, 115, 121|
|VNG1980C||hypothetical protein VNG1980C||68, 135|
|VNG2298H||hypothetical protein VNG2298H||42, 68, 152|
|VNG2452C||hypothetical protein VNG2452C||234|
|VNG2501C||hypothetical protein VNG2501C||68, 214, 234|
|VNG5175H||None||42, 68, 234|
|VNG6142C||hypothetical protein VNG6142C||42, 68, 295|
|VNG6144G||trsE||transfer complex protein||4, 5, 42, 68, 295|
|VNG6148H||hypothetical protein VNG6148H||42, 68|
|VNG6158H||hypothetical protein VNG6158H||42, 68|
|VNG6168H||hypothetical protein VNG6168H||38, 42|
|VNG6187G||orc3||orc / cell division control protein 6||42, 68|
|VNG6193H||hypothetical protein VNG6193H||17, 32, 34, 38, 41, 42, 44, 80|
|VNG6203H||hypothetical protein VNG6203H||42|
|VNG6232G||gvpJ2||GvpJ protein, cluster B||4, 5, 8, 28, 31, 42, 141, 148, 182, 188|
|VNG6235G||gvpH2||GvpH protein, cluster B||31, 42, 141, 188|
|VNG6242G||gvpC2||GvpC protein, cluster B||42, 185|
|VNG7121||hypothetical protein VNG7121||234|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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