Organism : Halobacterium salinarum NRC-1 | Module List :
Functional Annotations (2)
|nucleic acid binding||go/ molecular_function|
|DNA modification||go/ biological_process|
Regulation information for VNG1784C(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 10 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for VNG1784C
|nucleic acid binding||go/ molecular_function|
|DNA modification||go/ biological_process|
Module neighborhood information for VNG1784C
|Gene||Common Name||Description||Module membership|
|VNG0033H||hypothetical protein VNG0033H||83, 269|
|VNG0034H||hypothetical protein VNG0034H||28, 83|
|VNG0076H||hypothetical protein VNG0076H||28, 254|
|VNG0316C||hypothetical protein VNG0316C||42, 68|
|VNG0347H||hypothetical protein VNG0347H||83, 267|
|VNG0430H||hypothetical protein VNG0430H||42, 68, 151|
|VNG0462C||hypothetical protein VNG0462C||42, 57, 68, 151, 162, 246|
|VNG0505C||hypothetical protein VNG0505C||83, 288|
|VNG0573C||hypothetical protein VNG0573C||4, 5, 26, 28|
|VNG0819C||hypothetical protein VNG0819C||42|
|VNG0836H||hypothetical protein VNG0836H||42, 68|
|VNG0858C||hypothetical protein VNG0858C||68|
|VNG0870G||gatC||hypothetical protein VNG0870G||42, 68|
|VNG0988H||hypothetical protein VNG0988H||42, 68, 107, 203, 207, 210|
|VNG1041H||hypothetical protein VNG1041H||28|
|VNG1050H||hypothetical protein VNG1050H||28, 53, 60|
|VNG1270H||hypothetical protein VNG1270H||18, 30, 37, 42|
|VNG1362H||hypothetical protein VNG1362H||68|
|VNG1453H||hypothetical protein VNG1453H||4, 28|
|VNG1548C||hypothetical protein VNG1548C||28, 293|
|VNG1589C||hypothetical protein VNG1589C||4, 5, 8, 28, 69, 85, 204|
|VNG1622G||rfcB||replication factor C large subunit||5, 28, 53, 140|
|VNG1648G||trpF||hypothetical protein VNG1648G||4, 5, 28, 30, 48, 64, 87|
|VNG1649G||trpD||anthranilate phosphoribosyltransferase||28, 30, 48, 64, 87, 92|
|VNG1681C||hypothetical protein VNG1681C||20, 26, 28, 31, 147, 232|
|VNG1777H||hypothetical protein VNG1777H||192, 230, 234|
|VNG1779C||hypothetical protein VNG1779C||44, 131, 230, 234|
|VNG1784C||DNA primase||28, 42, 68, 83, 234|
|VNG1811G||eye||succinoglycan biosynthesis||42, 68, 179, 286|
|VNG1815G||carA||carbamoyl phosphate synthase small subunit||68, 86, 209, 257, 294, 298|
|VNG1816G||trh3||transcription regulator||68, 86, 139, 209, 238, 257, 298|
|VNG1818G||idi||Idi||68, 86, 209, 214, 234, 257|
|VNG1859G||deoC||hypothetical protein VNG1859G||42, 68|
|VNG1872C||hypothetical protein VNG1872C||42, 68, 186|
|VNG1886C||hypothetical protein VNG1886C||42, 68|
|VNG1891H||hypothetical protein VNG1891H||14, 42, 68, 135|
|VNG1893G||trp2||ABC transport protein||14, 42|
|VNG1894C||hypothetical protein VNG1894C||14, 42|
|VNG1921H||hypothetical protein VNG1921H||68|
|VNG1952H||hypothetical protein VNG1952H||18, 28, 30, 42, 68, 80, 91, 108, 121, 135|
|VNG1953C||hypothetical protein VNG1953C||13, 18, 30, 34, 42, 80, 91, 108, 115, 121|
|VNG1956H||hypothetical protein VNG1956H||18, 30, 34, 42, 80, 91, 108, 115, 121|
|VNG1964H||hypothetical protein VNG1964H||28, 63|
|VNG1980C||hypothetical protein VNG1980C||68, 135|
|VNG2096G||cctB||thermosome subunit beta||4, 5, 28, 53, 140, 173|
|VNG2100G||iluA||threonine dehydratase||5, 20, 26, 28|
|VNG2298H||hypothetical protein VNG2298H||42, 68, 152|
|VNG2386C||hypothetical protein VNG2386C||13, 28|
|VNG2387H||hypothetical protein VNG2387H||83|
|VNG2444C||hypothetical protein VNG2444C||17, 28, 31, 38, 173|
|VNG2452C||hypothetical protein VNG2452C||234|
|VNG2501C||hypothetical protein VNG2501C||68, 214, 234|
|VNG2678H||hypothetical protein VNG2678H||28|
|VNG5175H||None||42, 68, 234|
|VNG6142C||hypothetical protein VNG6142C||42, 68, 295|
|VNG6144G||trsE||transfer complex protein||4, 5, 42, 68, 295|
|VNG6148H||hypothetical protein VNG6148H||42, 68|
|VNG6158H||hypothetical protein VNG6158H||42, 68|
|VNG6168H||hypothetical protein VNG6168H||38, 42|
|VNG6170H||hypothetical protein VNG6170H||4, 5, 15, 26, 28, 31, 36, 53, 60, 63, 69, 72, 85, 122|
|VNG6176G||kdpA||potassium-transporting ATPase subunit A||5, 15, 18, 21, 26, 28, 31, 47, 51, 53, 62, 63, 69, 70, 72, 74, 177, 279|
|VNG6178G||kdpC||potassium-transporting ATPase C chain||5, 15, 18, 26, 28, 31, 47, 51, 53, 62, 63, 69, 70, 72, 74, 177, 279|
|VNG6187G||orc3||orc / cell division control protein 6||42, 68|
|VNG6193H||hypothetical protein VNG6193H||17, 32, 34, 38, 41, 42, 44, 80|
|VNG6203H||hypothetical protein VNG6203H||42|
|VNG6230G||gvpK2||GvpK protein, cluster B||4, 5, 8, 22, 28, 31, 141, 148, 181, 182, 188, 200|
|VNG6232G||gvpJ2||GvpJ protein, cluster B||4, 5, 8, 28, 31, 42, 141, 148, 182, 188|
|VNG6235G||gvpH2||GvpH protein, cluster B||31, 42, 141, 188|
|VNG6236G||gvpG2||GvpG protein, cluster B||8, 28, 141, 148, 181, 182, 188|
|VNG6239G||gvpE2||GvpE protein, cluster B||4, 5, 8, 28, 141, 148, 182, 188, 200|
|VNG6242G||gvpC2||GvpC protein, cluster B||42, 185|
|VNG6302C||hypothetical protein VNG6302C||83, 206|
|VNG6306C||hypothetical protein VNG6306C||28|
|VNG6404H||hypothetical protein VNG6404H||28, 69|
|VNG7121||hypothetical protein VNG7121||234|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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