PITA_25 megaCluster: 3 Residual: 0.20

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_25	3	0.20	15	0	0.915394	0

Members

Displaying 1 - 40 of 40

TFBS DB TF

TFs	percTargets	pValue
V_CREB_Q4_M00178	0.354839	0.00000207

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
15	GAGAAARNGAAA	NA	77	GCCCCGCCCCC	SP1_MA0079.2, Klf4_MA0039.2, SP1_MA0079.1, V$SP4_Q5_M01273, V$UF1H3BETA_Q6_M01068, V$ZFP281_01_M01597, V$SP1_Q6_M00196, V$SP1_Q6_01_M00931, V$SP1_Q4_01_M00932, V$SP1_03_M02281, V$SP1_02_M01303, V$SP1_Q2_01_M00933, V$MAZR_01_M00491, V$ZNF219_01_M01122, V$KLF7_03_M02773, V$GC_01_M00255, V$GKLF_02_M01588, V$CKROX_Q2_M01175, V$SP4_03_M02810, V$ZBP89_Q4_M01816, V$ZFP281_04_M02831, V$MAZ_Q6_M00649, V$EGR1_Q6_M01873, V$SP1SP3_Q4_M01219, V$EGR1_06_M02744, V$MAZ_Q6_01_M02023, V$SP1_01_M00008, V$KROX_Q6_M00982, V$SP2_01_M01783, V$ETF_Q6_M00695, V$CACD_01_M01113, V$WT1_Q6_01_M02036, V$EKLF_Q5_M01874, V$BCL6B_04_M02844, V$CACBINDINGPROTEIN_Q6_M00720, V$KLF15_Q2_M01714, V$E2F3_Q6_M02089, V$SMAD4_04_M02898, V$ZFP740_03_M02834, V$FKLF_Q5_M01837, V$EGR_Q6_M00807, V$ZFP410_04_M02936, V$WT1_Q6_M01118, V$CACCCBINDINGFACTOR_Q6_M00721, V$RNF96_01_M01199, Klf7.1, Sp4.1, Zfp281.2, Egr1.1, Bcl6b.2, Smad3.1, Zfp740.1, Zfp410.1, Zif268.1, KLF16_C2H2_DBD_monomeric_11_1, SP4_C2H2_full_monomeric_17_1, SP1_C2H2_DBD_monomeric_11_1, SP3_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1, KLF14_C2H2_DBD_monomeric_14_1, ZNF740_C2H2_full_monomeric_10_1, Klf12_C2H2_DBD_monomeric_15_1, KLF13_C2H2_full_monomeric_18_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.05	CGCCGT	NA	1.17	CGNCCGGC	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.47	CGGTAG	NA	NA	0.58	GCTTGACA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
mmu-miR-202-5p	0.708333	0.00000104

3p UTR TargetScan

miRNAs	percTargets	pValue
mmu-miR-1190	0.62963	0.000000111

100034251 WAP four-disulfide core domain 17 Details for RP23-430I21.1 - WAP four-disulfide core domain 17 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100034251 Tuberculist Genomic Region	100503370 predicted gene, 19660 Details for - - predicted gene, 19660 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100503370 Tuberculist Genomic Region
100503626 predicted gene, 19803 Details for - - predicted gene, 19803 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100503626 Tuberculist Genomic Region	100504591 predicted gene 15987 Details for - - predicted gene 15987 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100504591 Tuberculist Genomic Region
104215 ras homolog gene family, member Q Details for - - ras homolog gene family, member Q GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 104215 Tuberculist Genomic Region	109934 active BCR-related gene Details for RP23-48B14.2 - active BCR-related gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109934 Tuberculist Genomic Region
12874 carboxypeptidase D Details for RP23-396O3.1 - carboxypeptidase D GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12874 Tuberculist Genomic Region	12914 CREB binding protein Details for - - CREB binding protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12914 Tuberculist Genomic Region
13653 early growth response 1 Details for - - early growth response 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13653 Tuberculist Genomic Region	14284 fos-like antigen 2 Details for - - fos-like antigen 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14284 Tuberculist Genomic Region
233977 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 Details for - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 233977 Tuberculist Genomic Region	258681 olfactory receptor 235 Details for - - olfactory receptor 235 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 258681 Tuberculist Genomic Region
269593 leucine zipper protein 1 Details for RP23-426N4.1 - leucine zipper protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269593 Tuberculist Genomic Region	328365 zinc finger, MIZ-type containing 1 Details for - - zinc finger, MIZ-type containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 328365 Tuberculist Genomic Region
544752 taurine upregulated gene 1 Details for - - taurine upregulated gene 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 544752 Tuberculist Genomic Region	546325 predicted gene 5936 Details for RP23-459K15.9 - predicted gene 5936 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 546325 Tuberculist Genomic Region
56619 C-type lectin domain family 4, member e Details for - - C-type lectin domain family 4, member e GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56619 Tuberculist Genomic Region	59043 WD repeat and SOCS box-containing 2 Details for - - WD repeat and SOCS box-containing 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 59043 Tuberculist Genomic Region
67434 ankyrin repeat domain 33B Details for - - ankyrin repeat domain 33B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67434 Tuberculist Genomic Region	73998 hect domain and RLD 3 Details for - - hect domain and RLD 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 73998 Tuberculist Genomic Region
80752 family with sequence similarity 20, member C Details for - - family with sequence similarity 20, member C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80752 Tuberculist Genomic Region	100124347 T cell receptor alpha joining 41 Details for - - T cell receptor alpha joining 41 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100124347 Tuberculist Genomic Region
100503552 predicted gene, 19765 Details for - - predicted gene, 19765 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100503552 Tuberculist Genomic Region	226562 proline-rich coiled-coil 2C Details for - - proline-rich coiled-coil 2C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 226562 Tuberculist Genomic Region
320207 phosphoinositide-3-kinase, regulatory subunit 5, p101 Details for RP23-432M23.2 - phosphoinositide-3-kinase, regulatory subunit 5, p101 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 320207 Tuberculist Genomic Region	329562 RIKEN cDNA A530013C23 gene Details for - - RIKEN cDNA A530013C23 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 329562 Tuberculist Genomic Region
105559 muscleblind-like 2 Details for - - muscleblind-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 105559 Tuberculist Genomic Region	15957 interferon-induced protein with tetratricopeptide repeats 1 Details for - - interferon-induced protein with tetratricopeptide repeats 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15957 Tuberculist Genomic Region
16449 jagged 1 Details for RP23-173O12.3 - jagged 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16449 Tuberculist Genomic Region	269966 nucleoporin 98 Details for - - nucleoporin 98 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 269966 Tuberculist Genomic Region
54004 diaphanous homolog 2 (Drosophila) Details for - - diaphanous homolog 2 (Drosophila) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54004 Tuberculist Genomic Region	60533 CD274 antigen Details for - - CD274 antigen GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 60533 Tuberculist Genomic Region
67712 solute carrier family 25, member 37 Details for - - solute carrier family 25, member 37 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67712 Tuberculist Genomic Region	74645 family with sequence similarity 46, member C Details for DN-384L23.3 - family with sequence similarity 46, member C GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74645 Tuberculist Genomic Region
791405 predicted gene 10002 Details for - - predicted gene 10002 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 791405 Tuberculist Genomic Region	80719 immunoglobulin superfamily, member 6 Details for - - immunoglobulin superfamily, member 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 80719 Tuberculist Genomic Region
100434 solute carrier family 44, member 1 Details for RP23-20E10.4 - solute carrier family 44, member 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100434 Tuberculist Genomic Region	109711 actinin, alpha 1 Details for - - actinin, alpha 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 109711 Tuberculist Genomic Region
20482 SKI-like Details for - - SKI-like GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 20482 Tuberculist Genomic Region	68427 solute carrier family 39 (metal ion transporter), member 13 Details for RP23-263H8.2 - solute carrier family 39 (metal ion transporter), member 13 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68427 Tuberculist Genomic Region

Summary

Members

Details for RP23-430I21.1 - WAP four-disulfide core domain 17

Details for - - predicted gene, 19660

Details for - - predicted gene, 19803

Details for - - predicted gene 15987

Details for - - ras homolog gene family, member Q

Details for RP23-48B14.2 - active BCR-related gene

Details for RP23-396O3.1 - carboxypeptidase D

Details for - - CREB binding protein

Details for - - early growth response 1

Details for - - fos-like antigen 2

Details for - - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1

Details for - - olfactory receptor 235

Details for RP23-426N4.1 - leucine zipper protein 1

Details for - - zinc finger, MIZ-type containing 1

Details for - - taurine upregulated gene 1

Details for RP23-459K15.9 - predicted gene 5936

Details for - - C-type lectin domain family 4, member e

Details for - - WD repeat and SOCS box-containing 2

Details for - - ankyrin repeat domain 33B

Details for - - hect domain and RLD 3

Details for - - family with sequence similarity 20, member C

Details for - - T cell receptor alpha joining 41

Details for - - predicted gene, 19765

Details for - - proline-rich coiled-coil 2C

Details for RP23-432M23.2 - phosphoinositide-3-kinase, regulatory subunit 5, p101

Details for - - RIKEN cDNA A530013C23 gene

Details for - - muscleblind-like 2

Details for - - interferon-induced protein with tetratricopeptide repeats 1

Details for RP23-173O12.3 - jagged 1

Details for - - nucleoporin 98

Details for - - diaphanous homolog 2 (Drosophila)

Details for - - CD274 antigen

Details for - - solute carrier family 25, member 37

Details for DN-384L23.3 - family with sequence similarity 46, member C

Details for - - predicted gene 10002

Details for - - immunoglobulin superfamily, member 6

Details for RP23-20E10.4 - solute carrier family 44, member 1

Details for - - actinin, alpha 1

Details for - - SKI-like

Details for RP23-263H8.2 - solute carrier family 39 (metal ion transporter), member 13

GO Terms

3p UTR PITA