Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_0861(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_0861
|Gene||Common Name||Description||Module membership|
|RSP_0030||RSP_0030||PAS sensor diguanylatecyclase/phosphodiesterase (NCBI)||60, 245|
|RSP_0041||RSP_0041||hypothetical protein (NCBI)||60, 245|
|RSP_0085||RSP_0085||multisensor hybrid histidine kinase (NCBI)||60, 259|
|RSP_0086||RSP_0086||hypothetical protein (NCBI)||60, 259|
|RSP_0399||RSP_0399||hypothetical protein (NCBI)||60, 276|
|RSP_0400||RSP_0400||hypothetical protein (NCBI)||60, 276|
|RSP_0401||RSP_0401||hypothetical protein (NCBI)||60, 276|
|RSP_0499||hupD||HycI, hydrogenase maturation protease (NCBI)||199, 245|
|RSP_0500||RSP_0500||putative HupF/HypC hydrogenase protein (NCBI)||199, 245|
|RSP_0501||hupG||HupG hydrogenase expression/formation protein (NCBI)||199, 245|
|RSP_0502||hupH||HupH hydrogenase expression/formation protein (NCBI)||199, 245|
|RSP_0503||hupJ||HupJ, contains rubredoxin domain (NCBI)||199, 245|
|RSP_0504||hupK||HupK (NCBI)||199, 245|
|RSP_0505||hypA||Hydrogenase expression/synthesis, HypA family (NCBI)||199, 245|
|RSP_0506||hypB||NI2+-binding GTPase protein HypB (NCBI)||199, 245|
|RSP_0507||RSP_0507||HupR response regulator (NCBI)||199, 245|
|RSP_0508||hypC||Hydrogenase expression/formation protein HypC (NCBI)||199, 245|
|RSP_0509||hypD||hydrogenase isoenzymes formation protein HypD (NCBI)||199, 245|
|RSP_0510||hypE||hydrogenase expression/formation protein HypE (NCBI)||199, 245|
|RSP_0513||RSP_0513||hypothetical protein (NCBI)||60, 245|
|RSP_0860||RSP_0860||hypothetical protein (NCBI)||245, 380|
|RSP_0861||RSP_0861||putative transmembrane hypothetical protein (NCBI)||60, 245|
|RSP_0927||lyrS||transcriptional regulator, LyrR family (NCBI)||60, 276|
|RSP_1144||Gst||Glutathione S-transferase (NCBI)||67, 245|
|RSP_1627||RSP_1627||Putative N-6 adenine-specific DNA methylase (NCBI)||245, 379|
|RSP_1901||RSP_1901||Hypothetical protein with TPR repeat (NCBI)||91, 245|
|RSP_1902||RSP_1902||Conserved hypothetical protein with TPR repeat (NCBI)||60, 276|
|RSP_1903||RSP_1903||Putative Flp pilus assembly protein TadC (NCBI)||60, 276|
|RSP_1904||RSP_1904||Putative Flp pilus assembly protein TadB (NCBI)||60, 276|
|RSP_1905||RSP_1905||Putative Flp pilus assembly protein ATPase CpaF (NCBI)||60, 276|
|RSP_1907||RSP_1907||Putative Flp pilus assembly protein ATPase CpaE (NCBI)||60, 276|
|RSP_1910||RSP_1910||Putative Flp pilus assembly protein CpaB (NCBI)||60, 276|
|RSP_3217||RSP_3217||Cache sensor protein (NCBI)||22, 60|
|RSP_3253||RSP_3253||Predicted acetamidase / formamidase (NCBI)||157, 245|
|RSP_3255||RSP_3255||ABC peptide transporter, periplasmic binding protein (NCBI)||157, 245|
|RSP_3432||RSP_3432||methyl-accepting chemotaxis protein (NCBI)||60, 211|
|RSP_3708||mcpJ||methyl accepting chemotaxis protein (NCBI)||60, 211|
|RSP_3725||RSP_3725||hypothetical protein (NCBI)||60, 276|
|RSP_3727||RSP_3727||hypothetical protein (NCBI)||60, 276|
|RSP_3768||RSP_3768||hypothetical protein (NCBI)||60, 276|
|RSP_3769||RSP_3769||Adenine-specific DNA methyltransferase (NCBI)||245, 379|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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