Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
probable peptidase (NCBI)
Functional Annotations (2)
|peptidase activity||go/ molecular_function|
Regulation information for RSP_1647(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_1647
|peptidase activity||go/ molecular_function|
Module neighborhood information for RSP_1647
|Gene||Common Name||Description||Module membership|
|RSP_0181||RSP_0181||ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit (NCBI)||193, 342|
|RSP_0211||RSP_0211||hypothetical protein (NCBI)||74, 191|
|RSP_0212||RSP_0212||HNH nuclease (NCBI)||74, 193|
|RSP_0213||RSP_0213||Phage terminase-like protein large subunit (NCBI)||193, 325|
|RSP_0615||RSP_0615||Putative oxidoreductase (NCBI)||138, 193|
|RSP_0857||btaB||S-adenosylmethionine-diacylgycerolhomoserine-N-methlytransferase (NCBI)||150, 191|
|RSP_1645||RSP_1645||putative phage-related protein (NCBI)||191, 233|
|RSP_1647||RSP_1647||probable peptidase (NCBI)||191, 193|
|RSP_1648||RSP_1648||hypothetical protein (NCBI)||193, 355|
|RSP_1781||RSP_1781||putative membrane-anchored oxidoreductase, similar to L-sorbosone dehydrogenase (NCBI)||138, 191|
|RSP_1848||RSP_1848||Pyruvate kinase (NCBI)||150, 191|
|RSP_2028||RSP_2028||hypothetical protein (NCBI)||150, 191|
|RSP_2041||RSP_2041||hypothetical protein (NCBI)||150, 191|
|RSP_2062||RSP_2062||hypothetical protein (NCBI)||138, 191|
|RSP_2065||RSP_2065||hypothetical protein (NCBI)||138, 191|
|RSP_2067||RSP_2067||putative prophage LambdaSo, major capsid protein, HK97 family (NCBI)||137, 191|
|RSP_2069||RSP_2069||putative phage portal protein, HK97 family (NCBI)||137, 191|
|RSP_2177||RSP_2177||hypothetical protein (NCBI)||137, 191|
|RSP_2232||RSP_2232||putative uracil-DNA glycosylase (NCBI)||38, 193|
|RSP_2466||RSP_2466||hypothetical protein (NCBI)||193, 235|
|RSP_2467||RSP_2467||Putative large terminase (NCBI)||191, 193|
|RSP_2468||RSP_2468||putative portal protein (NCBI)||193, 236|
|RSP_2469||RSP_2469||hypothetical protein (NCBI)||193, 236|
|RSP_2470||RSP_2470||putative prohead protease (NCBI)||193, 236|
|RSP_2471||RSP_2471||Predicted phage phi-C31 gp36 major capsid-like protein (NCBI)||193, 235|
|RSP_2472||RSP_2472||hypothetical protein (NCBI)||193, 235|
|RSP_2473||RSP_2473||hypothetical protein (NCBI)||191, 193|
|RSP_2475||RSP_2475||putative phage tail minor protein (NCBI)||191, 193|
|RSP_2477||RSP_2477||hypothetical protein (NCBI)||189, 193|
|RSP_2478||RSP_2478||hypothetical protein (NCBI)||193, 235|
|RSP_2480||RSP_2480||hypothetical protein (NCBI)||193, 235|
|RSP_2620||RSP_2620||hypothetical protein (NCBI)||191, 300|
|RSP_2679||RSP_2679||ATP-dependent DNA ligase (NCBI)||74, 191|
|RSP_2794||RSP_2794||Putative monooxygenase beta subunit (NCBI)||103, 193|
|RSP_2795||RSP_2795||Putative regulatory protein of multicomponent monooxygenase (NCBI)||103, 193|
|RSP_3030||RSP_3030||ABC peptide/opine transporter, inner membrane subunit (NCBI)||193, 282|
|RSP_3032||RSP_3032||ABC peptide/opine transporter, ATPase subunit (NCBI)||193, 282|
|RSP_3033||RSP_3033||ABC peptide/opine transporter, ATPase subunit (NCBI)||193, 282|
|RSP_3034||RSP_3034||ABC peptide/opine transporter, periplasmic substrate-binding protein (NCBI)||193, 282|
|RSP_3359||gpD||Phage tail protein D (NCBI)||191, 282|
|RSP_3543||RSP_3543||Probable type I restriction-modification system restriction subunit (NCBI)||191, 229|
|RSP_3623||RSP_3623||putative integrase (NCBI)||137, 191|
|RSP_3782||RSP_3782||hypothetical protein (NCBI)||150, 191|
|RSP_6247||RSP_6247||Phage-related protein, possible DNA packing (NCBI)||191, 352|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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