Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_3498(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_3498
|Gene||Common Name||Description||Module membership|
|RSP_0134||RSP_0134||hypothetical protein (NCBI)||103, 183|
|RSP_0186||RSP_0186||Transcriptional regulator, TetR family (NCBI)||92, 370|
|RSP_0204||RSP_0204||metallo-beta-lactamase family protein (NCBI)||285, 370|
|RSP_0209||RSP_0209||possible prophage Lp3 protein 18 (NCBI)||103, 138|
|RSP_0297||RSP_0297||ABC branched chain amino acid transporter, ATPase subunit (NCBI)||103, 304|
|RSP_0298||RSP_0298||ABC branched chain amino acid transporter, ATPase subunit (NCBI)||103, 313|
|RSP_0299||RSP_0299||ABC branched chain amino acid transporter, inner membrane subunit (NCBI)||103, 313|
|RSP_0300||RSP_0300||ABC branched chain amino acid transporter, inner membrane subunit (NCBI)||103, 147|
|RSP_0477||RSP_0477||hypothetical protein (NCBI)||97, 103|
|RSP_0605||RSP_0605||hypothetical protein (NCBI)||249, 370|
|RSP_0607||RSP_0607||sigma 24 (NCBI)||77, 103|
|RSP_0617||RSP_0617||hypothetical protein (NCBI)||103, 325|
|RSP_0952||RSP_0952||Transglutaminase-like protein (NCBI)||249, 370|
|RSP_1294||RSP_1294||possible 2-oxoisovalerate dehydrogenase; E1 component, alpha and beta subunit (NCBI)||103, 217|
|RSP_1611||RSP_1611||sensor histidine kinase (NCBI)||35, 370|
|RSP_1612||RSP_1612||Sigma-54 dependent transcriptional regulator (NCBI)||370, 379|
|RSP_1933||RSP_1933||Outer membrane protein, OmpA/MotB family (NCBI)||103, 280|
|RSP_2019||RSP_2019||hypothetical protein (NCBI)||103, 120|
|RSP_2022||RSP_2022||Cytochrome b/diheme cytochrome c hybrid protein (NCBI)||103, 229|
|RSP_2026||RSP_2026||transcriptional regulator, AraC family (NCBI)||103, 176|
|RSP_2055||RSP_2055||hypothetical protein (NCBI)||103, 379|
|RSP_2105||RSP_2105||hypothetical protein (NCBI)||103, 325|
|RSP_2291||RSP_2291||hypothetical protein (NCBI)||14, 370|
|RSP_2385||RSP_2385||hypothetical protein (NCBI)||103, 124|
|RSP_2429||RSP_2429||Glutathione-regulated potassium-efflux system protein, kefB (NCBI)||36, 370|
|RSP_2432||RSP_2432||hypothetical protein (NCBI)||31, 370|
|RSP_2433||cheY2||Chemotaxis response regulator, CheY2 (NCBI)||285, 370|
|RSP_2434||cheR1||Putative MCP methyltransferase, CheR1 (NCBI)||31, 370|
|RSP_2435||cheW1||Putative chemotaxis scaffold protein, CheW1 (NCBI)||31, 370|
|RSP_2436||cheA1||Chemotaxis histidine protein kinase, CheA1 (NCBI)||31, 370|
|RSP_2437||cheY1||chemotaxis response regulator, CheY1 (NCBI)||31, 370|
|RSP_2438||cheX||Putative CheX protein (NCBI)||31, 370|
|RSP_2439||cheD||putative chemotaxis protein, CheD (NCBI)||31, 370|
|RSP_2440||mcpA||Methyl accepting chemotaxis protein (NCBI)||31, 370|
|RSP_2721||RSP_2721||hypothetical protein (NCBI)||38, 370|
|RSP_2792||RSP_2792||putative monooxygenase alpha subunit (NCBI)||77, 103|
|RSP_2793||RSP_2793||Putative reductase component of monooxygenase (NCBI)||103, 313|
|RSP_2794||RSP_2794||Putative monooxygenase beta subunit (NCBI)||103, 193|
|RSP_2795||RSP_2795||Putative regulatory protein of multicomponent monooxygenase (NCBI)||103, 193|
|RSP_2796||RSP_2796||hypothetical protein (NCBI)||77, 103|
|RSP_2798||groEL3||Putative chaperonin groEL (NCBI)||77, 103|
|RSP_3018||RSP_3018||putative acyl-CoA dehydrogenase (NCBI)||304, 370|
|RSP_3060||cysE||possible O-acetylserine synthase (NCBI)||141, 370|
|RSP_3062||fabG||3-oxoacyl-(acyl-carrier-protein) reductase (NCBI)||141, 370|
|RSP_3116||RSP_3116||Conserved hypothetical membrane/transport protein (NCBI)||246, 370|
|RSP_3230||RSP_3230||hypothetical protein (NCBI)||103, 279|
|RSP_3334||RSP_3334||HyuE hydantoin racemase (NCBI)||44, 103|
|RSP_3360||RSP_3360||Adenine specific DNA methyltransferase, D12 class (NCBI)||103, 342|
|RSP_3451||RSP_3451||TRAP-T family transporter, large (12TMs) inner membrane subunit (NCBI)||61, 370|
|RSP_3493||RSP_3493||hypothetical protein (NCBI)||220, 370|
|RSP_3495||RSP_3495||hypothetical protein (NCBI)||116, 370|
|RSP_3496||RSP_3496||Zinc carboxypeptidase A metalloprotease (M14) (NCBI)||220, 370|
|RSP_3497||RSP_3497||Caspase-1, p20 (NCBI)||103, 168|
|RSP_3498||RSP_3498||Antifreeze protein, type I (NCBI)||103, 370|
|RSP_3541||RSP_3541||hypothetical protein (NCBI)||103, 242|
|RSP_3576||RSP_3576||hypothetical protein (NCBI)||103, 249|
|RSP_3812||RSP_3812||recombinase (NCBI)||103, 189|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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