Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_3794(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_3794
|Gene||Common Name||Description||Module membership|
|RSP_0135||RSP_0135||hypothetical protein (NCBI)||29, 133|
|RSP_0136||RSP_0136||putative integrase for prophage CP-933U (NCBI)||29, 140|
|RSP_0543||fixU||hypothetical protein (NCBI)||141, 244|
|RSP_0544||nifZ||probable NifZ (NCBI)||141, 354|
|RSP_0545||RSP_0545||hypothetical protein (NCBI)||141, 300|
|RSP_0604||RSP_0604||hypothetical protein (NCBI)||29, 249|
|RSP_0634||RSP_0634||TRAP-T family transporter, DctM (12 TMs) subunit (NCBI)||17, 141|
|RSP_0635||RSP_0635||TRAP-T family transporter, DctQ (4 TMs) subunit (NCBI)||17, 141|
|RSP_0636||RSP_0636||TRAP-T family transporter, DctP (periplasmic binding) subunit (NCBI)||17, 141|
|RSP_0813||RSP_0813||Response regulator receiver protein (NCBI)||29, 157|
|RSP_0838||RSP_0838||putative DNA polymerase III, delta subunit / DNA binding (NCBI)||141, 342|
|RSP_0877||RSP_0877||Putative transporter, RhaT family, DMT superfamily (NCBI)||29, 187|
|RSP_0888||amtB||Ammonium transporter, AmtB (NCBI)||141, 183|
|RSP_1042||RSP_1042||hypothetical protein (NCBI)||141, 357|
|RSP_1303||flgE||putative flagellar hook protein (NCBI)||29, 246|
|RSP_1433||RSP_1433||hypothetical protein (NCBI)||141, 285|
|RSP_1441||RSP_1441||regulatory protein, GntR family (NCBI)||89, 141|
|RSP_1500||RSP_1500||possible anti-sigma regulatory kinase (NCBI)||29, 304|
|RSP_1502||RSP_1502||GAF domain protein (NCBI)||29, 174|
|RSP_1616||RSP_1616||hypothetical protein (NCBI)||141, 342|
|RSP_1652||RSP_1652||hypothetical protein (NCBI)||73, 141|
|RSP_1853||TrkH2||potassium uptake transporter, transmembrane component, TrkH (NCBI)||29, 67|
|RSP_2010||RSP_2010||hypothetical protein (NCBI)||141, 343|
|RSP_2025||RSP_2025||hypothetical protein (NCBI)||29, 288|
|RSP_2079||RSP_2079||hypothetical protein (NCBI)||29, 380|
|RSP_2381||RSP_2381||putative 3-methyladenine DNA glycosylase (NCBI)||29, 101|
|RSP_2476||RSP_2476||hypothetical protein (NCBI)||29, 110|
|RSP_2553||RSP_2553||hypothetical protein (NCBI)||141, 157|
|RSP_2677||RSP_2677||Putative Mg++ transport associated protein, MgtC (NCBI)||138, 141|
|RSP_2756||RSP_2756||hypothetical protein (NCBI)||125, 141|
|RSP_3015||RSP_3015||hypothetical protein (NCBI)||29, 183|
|RSP_3025||RSP_3025||possible NAD(P)H oxidoreductase (NCBI)||141, 303|
|RSP_3036||RSP_3036||hypothetical protein (NCBI)||38, 141|
|RSP_3060||cysE||possible O-acetylserine synthase (NCBI)||141, 370|
|RSP_3061||RSP_3061||hypothetical protein (NCBI)||38, 141|
|RSP_3062||fabG||3-oxoacyl-(acyl-carrier-protein) reductase (NCBI)||141, 370|
|RSP_3137||RSP_3137||hypothetical protein (NCBI)||141, 168|
|RSP_3335||RSP_3335||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3336||RSP_3336||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3443||RSP_3443||putative acetamidase/formamidase (NCBI)||61, 141|
|RSP_3652||RSP_3652||Predicted phage phi-C31 gp36 major capsid-like protein (NCBI)||141, 233|
|RSP_3653||RSP_3653||hypothetical protein (NCBI)||141, 233|
|RSP_3663||RSP_3663||TRAP-T family transporter, small (4TMs) inner membrane subunit (NCBI)||141, 342|
|RSP_3777||RSP_3777||hypothetical protein (NCBI)||29, 356|
|RSP_3783||RSP_3783||putative bacteriophage-related protein, Phage portal protein, lambda family (NCBI)||29, 183|
|RSP_3786||RSP_3786||hypothetical protein (NCBI)||141, 236|
|RSP_3794||RSP_3794||hypothetical protein (NCBI)||29, 141|
|RSP_3797||RSP_3797||hypothetical protein (NCBI)||141, 157|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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