Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_3786(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_3786
|Gene||Common Name||Description||Module membership|
|RSP_0413||RSP_0413||two component diguanylate cyclase (NCBI)||137, 236|
|RSP_0462||RSP_0462||hypothetical protein (NCBI)||111, 236|
|RSP_0543||fixU||hypothetical protein (NCBI)||141, 244|
|RSP_0544||nifZ||probable NifZ (NCBI)||141, 354|
|RSP_0545||RSP_0545||hypothetical protein (NCBI)||141, 300|
|RSP_0634||RSP_0634||TRAP-T family transporter, DctM (12 TMs) subunit (NCBI)||17, 141|
|RSP_0635||RSP_0635||TRAP-T family transporter, DctQ (4 TMs) subunit (NCBI)||17, 141|
|RSP_0636||RSP_0636||TRAP-T family transporter, DctP (periplasmic binding) subunit (NCBI)||17, 141|
|RSP_0838||RSP_0838||putative DNA polymerase III, delta subunit / DNA binding (NCBI)||141, 342|
|RSP_0888||amtB||Ammonium transporter, AmtB (NCBI)||141, 183|
|RSP_1010||RSP_1010||possible esterase/lipase/thioesterase (NCBI)||196, 236|
|RSP_1014||RSP_1014||sigma24 (NCBI)||54, 236|
|RSP_1042||RSP_1042||hypothetical protein (NCBI)||141, 357|
|RSP_1114||RSP_1114||Hemolysin-type calcium-binding toxin (NCBI)||28, 236|
|RSP_1428||RSP_1428||Possible Pre (Mob) type recombination enzyme (NCBI)||73, 236|
|RSP_1433||RSP_1433||hypothetical protein (NCBI)||141, 285|
|RSP_1441||RSP_1441||regulatory protein, GntR family (NCBI)||89, 141|
|RSP_1616||RSP_1616||hypothetical protein (NCBI)||141, 342|
|RSP_1638||RSP_1638||hypothetical protein (NCBI)||233, 236|
|RSP_1643||RSP_1643||hypothetical protein (NCBI)||236, 300|
|RSP_1652||RSP_1652||hypothetical protein (NCBI)||73, 141|
|RSP_1662||RSP_1662||Integrase/recombinase (NCBI)||236, 380|
|RSP_1872||RSP_1872||Glycosyl transferase, family 2 (NCBI)||236, 238|
|RSP_1955||RSP_1955||hypothetical protein (NCBI)||124, 236|
|RSP_1968||RSP_1968||Possible integrase/recombinase (NCBI)||236, 238|
|RSP_2010||RSP_2010||hypothetical protein (NCBI)||141, 343|
|RSP_2378||cypC||putative fatty acid beta hydroxylase (cytochrome P450) (NCBI)||236, 238|
|RSP_2468||RSP_2468||putative portal protein (NCBI)||193, 236|
|RSP_2469||RSP_2469||hypothetical protein (NCBI)||193, 236|
|RSP_2470||RSP_2470||putative prohead protease (NCBI)||193, 236|
|RSP_2553||RSP_2553||hypothetical protein (NCBI)||141, 157|
|RSP_2589||RSP_2589||hypothetical protein (NCBI)||236, 338|
|RSP_2677||RSP_2677||Putative Mg++ transport associated protein, MgtC (NCBI)||138, 141|
|RSP_2756||RSP_2756||hypothetical protein (NCBI)||125, 141|
|RSP_2757||RSP_2757||hypothetical protein (NCBI)||236, 246|
|RSP_2789||RSP_2789||hypothetical protein (NCBI)||236, 282|
|RSP_2791||RSP_2791||hypothetical protein (NCBI)||168, 236|
|RSP_3025||RSP_3025||possible NAD(P)H oxidoreductase (NCBI)||141, 303|
|RSP_3036||RSP_3036||hypothetical protein (NCBI)||38, 141|
|RSP_3060||cysE||possible O-acetylserine synthase (NCBI)||141, 370|
|RSP_3061||RSP_3061||hypothetical protein (NCBI)||38, 141|
|RSP_3062||fabG||3-oxoacyl-(acyl-carrier-protein) reductase (NCBI)||141, 370|
|RSP_3100||RSP_3100||hypothetical protein (NCBI)||137, 236|
|RSP_3137||RSP_3137||hypothetical protein (NCBI)||141, 168|
|RSP_3206||RSP_3206||Putative xanthine dehydrogenase (NCBI)||74, 236|
|RSP_3258||RSP_3258||ABC peptide transporter, inner membrane subunit (NCBI)||236, 282|
|RSP_3259||RSP_3259||Transcription antitermination protein (NCBI)||77, 236|
|RSP_3335||RSP_3335||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3336||RSP_3336||ABC spermidine/putrescine transporter, inner membrane subunit (NCBI)||44, 141|
|RSP_3338||RSP_3338||ABC spermidine/putrescine transporter, ATPase subunit (NCBI)||236, 251|
|RSP_3380||RSP_3380||hypothetical protein (NCBI)||77, 236|
|RSP_3443||RSP_3443||putative acetamidase/formamidase (NCBI)||61, 141|
|RSP_3652||RSP_3652||Predicted phage phi-C31 gp36 major capsid-like protein (NCBI)||141, 233|
|RSP_3653||RSP_3653||hypothetical protein (NCBI)||141, 233|
|RSP_3663||RSP_3663||TRAP-T family transporter, small (4TMs) inner membrane subunit (NCBI)||141, 342|
|RSP_3786||RSP_3786||hypothetical protein (NCBI)||141, 236|
|RSP_3787||RSP_3787||hypothetical protein (NCBI)||236, 285|
|RSP_3794||RSP_3794||hypothetical protein (NCBI)||29, 141|
|RSP_3797||RSP_3797||hypothetical protein (NCBI)||141, 157|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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