Desulfovibrio vulgaris Hildenborough Module 9 Residual: 0.47

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Summary

Residual: 0.47 Score: -33.509 version: dvh_cmonkey_11_Mar_02

Members

DVU0084 Methylthioribose-1-phosphate isomerase

Details for DVU0084 - Methylthioribose-1-phosphate isomerase

GO Terms: GO:0019284, GO:0019509, GO:0046523

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0084

Tuberculist Genomic Region

DVU1369 Uncharacterized protein

Details for DVU1369 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1369

Tuberculist Genomic Region

DVU0087 Conserved domain protein

Details for DVU0087 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0087

Tuberculist Genomic Region

DVU1370 Uncharacterized protein

Details for DVU1370 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1370

Tuberculist Genomic Region

DVU0088 Sodium/pantothenate symporter

Details for DVU0088 - Sodium/pantothenate symporter

GO Terms: GO:0016021, GO:0015233, GO:0005886, GO:0031402, GO:0071436, GO:0015081

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0088

Tuberculist Genomic Region

DVU1459 tRNA

Details for DVU1459 - tRNA

GO Terms: GO:0005524, GO:0005737, GO:0016879, GO:0006400

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1459

Tuberculist Genomic Region

DVU0091 Uncharacterized protein

Details for DVU0091 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0091

Tuberculist Genomic Region

DVU1540 Formyltetrahydrofolate deformylase

Details for DVU1540 - Formyltetrahydrofolate deformylase

GO Terms: GO:0006189, GO:0016597, GO:0008864, GO:0016742

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1540

Tuberculist Genomic Region

DVU0141 Peptidase, M50 family

Details for DVU0141 - Peptidase, M50 family

GO Terms: GO:0004222

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0141

Tuberculist Genomic Region

DVU1860 Apolipoprotein N-acyltransferase

Details for DVU1860 - Apolipoprotein N-acyltransferase

GO Terms: GO:0016410, GO:0016810, GO:0016021, GO:0042158, GO:0006807, GO:0005886

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1860

Tuberculist Genomic Region

DVU0142 Tryptophanyl-tRNA synthetase

Details for DVU0142 - Tryptophanyl-tRNA synthetase

GO Terms: GO:0005524, GO:0005737, GO:0004830, GO:0006436

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0142

Tuberculist Genomic Region

DVU1863 Site-determining protein

Details for DVU1863 - Site-determining protein

GO Terms: GO:0005524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1863

Tuberculist Genomic Region

DVU0323 Bifunctional protein FolD

Details for DVU0323 - Bifunctional protein FolD

GO Terms: GO:0009396, GO:0000105, GO:0004477, GO:0009086, GO:0004488, GO:0006164, GO:0035999

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0323

Tuberculist Genomic Region

DVU2257 Uncharacterized protein

Details for DVU2257 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2257

Tuberculist Genomic Region

DVU0324 Uncharacterized protein

Details for DVU0324 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0324

Tuberculist Genomic Region

DVU2320 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein

Details for DVU2320 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein

GO Terms: GO:0010181, GO:0016831, GO:0016491, GO:0005886, GO:0006744

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2320

Tuberculist Genomic Region

DVU0651 Membrane protein, putative

Details for DVU0651 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0651

Tuberculist Genomic Region

DVU2461 Oligopeptide ABC transporter, permease protein

Details for DVU2461 - Oligopeptide ABC transporter, permease protein

GO Terms: GO:0016021, GO:0006810

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2461

Tuberculist Genomic Region

DVU0794 Enoyl-[acyl-carrier-protein] reductase [NADH]

Details for DVU0794 - Enoyl-[acyl-carrier-protein] reductase [NADH]

GO Terms: GO:0004318, GO:0006633

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0794

Tuberculist Genomic Region

DVU2558 Biotin synthase

Details for DVU2558 - Biotin synthase

GO Terms: GO:0051537, GO:0051539, GO:0009102, GO:0004076, GO:0005506

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2558

Tuberculist Genomic Region

DVU1029 Histidinol-phosphate aminotransferase

Details for DVU1029 - Histidinol-phosphate aminotransferase

GO Terms: GO:0080130, GO:0000105, GO:0004400, GO:0030170

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1029

Tuberculist Genomic Region

DVU3297 Tryptophan-specific transport protein

Details for DVU3297 - Tryptophan-specific transport protein

GO Terms: GO:0015173, GO:0005887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3297

Tuberculist Genomic Region

DVU1185 Colicin V production family protein

Details for DVU1185 - Colicin V production family protein

GO Terms: GO:0016020, GO:0009403

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1185

Tuberculist Genomic Region

DVU2634 Uncharacterized protein

Details for DVU2634 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2634

Tuberculist Genomic Region

DVU1189 Uncharacterized protein

Details for DVU1189 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1189

Tuberculist Genomic Region

Displaying 1 - 25 of 25

Motifs

Motif 1: e-value: 12000 e-value: 13000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1340

Transcriptional regulator, Fur family
 up-regulates 0.12

DVU1340

DVU1518

Transcriptional regulator cI, truncation
 down-regulates -0.13

DVU1518

DVU1561

Molybdenum-binding protein, HTH domain
 down-regulates -0.11

DVU1561

DVU2588

DNA-binding response regulator
 down-regulates -0.10

DVU2588

DVUA0143

Nif-specific regulatory protein
 down-regulates -0.15

DVUA0143

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006732 coenzyme metabolic process 10 0.08 2 0.0020
BP GO:0051186 cofactor metabolic process 12 0.10 2 0.0029
BP GO:1901607 alpha-amino acid biosynthetic process 15 0.12 2 0.0045
BP GO:0008652 cellular amino acid biosynthetic process 17 0.14 2 0.0058
BP GO:1901566 organonitrogen compound biosynthetic pro... 68 0.55 3 0.0060
BP GO:0016053 organic acid biosynthetic process 18 0.15 2 0.0066
BP GO:0046394 carboxylic acid biosynthetic process 18 0.15 2 0.0066
BP GO:0072521 purine-containing compound metabolic pro... 21 0.17 2 0.0090
BP GO:1901605 alpha-amino acid metabolic process 22 0.18 2 0.0098
BP GO:0044711 single-organism biosynthetic process 82 0.67 3 0.0107
BP GO:1901564 organonitrogen compound metabolic proces... 86 0.70 3 0.0123
BP GO:0044281 small molecule metabolic process 88 0.72 3 0.0132
BP GO:0006520 cellular amino acid metabolic process 27 0.22 2 0.0148
BP GO:0034641 cellular nitrogen compound metabolic pro... 92 0.75 3 0.0151
BP GO:0006725 cellular aromatic compound metabolic pro... 94 0.76 3 0.0161
BP GO:0006082 organic acid metabolic process 30 0.24 2 0.0182
BP GO:0019752 carboxylic acid metabolic process 30 0.24 2 0.0182
BP GO:0043436 oxoacid metabolic process 30 0.24 2 0.0182
BP GO:0044249 cellular biosynthetic process 98 0.80 3 0.0183
BP GO:0046483 heterocycle metabolic process 98 0.80 3 0.0183
BP GO:0044283 small molecule biosynthetic process 31 0.25 2 0.0195
BP GO:1901360 organic cyclic compound metabolic proces... 101 0.82 3 0.0201
BP GO:1901576 organic substance biosynthetic process 102 0.83 3 0.0207
BP GO:0000096 sulfur amino acid metabolic process 3 0.02 1 0.0243
BP GO:0000097 sulfur amino acid biosynthetic process 3 0.02 1 0.0243
BP GO:0043094 cellular metabolic compound salvage 3 0.02 1 0.0243
BP GO:0006790 sulfur compound metabolic process 4 0.03 1 0.0323
BP GO:0009066 aspartate family amino acid metabolic pr... 4 0.03 1 0.0323
BP GO:0009067 aspartate family amino acid biosynthetic... 4 0.03 1 0.0323
BP GO:0044272 sulfur compound biosynthetic process 4 0.03 1 0.0323
BP GO:0055086 nucleobase-containing small molecule met... 42 0.34 2 0.0353
BP GO:0044710 single-organism metabolic process 124 1.01 3 0.0373
BP GO:0006807 nitrogen compound metabolic process 127 1.03 3 0.0401
BP GO:0009058 biosynthetic process 133 1.08 3 0.0461
BP GO:1901135 carbohydrate derivative metabolic proces... 49 0.40 2 0.0475
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016747 transferase activity, transferring acyl ... 17 0.13 2 0.0070
MF GO:0016746 transferase activity, transferring acyl ... 21 0.16 2 0.0106
MF GO:0004312 fatty acid synthase activity 4 0.03 1 0.0309
MF GO:0005342 organic acid transmembrane transporter a... 4 0.03 1 0.0309
MF GO:0008514 organic anion transmembrane transporter ... 4 0.03 1 0.0309
MF GO:0015171 amino acid transmembrane transporter act... 4 0.03 1 0.0309
MF GO:0016628 oxidoreductase activity, acting on the C... 4 0.03 1 0.0309
MF GO:0046943 carboxylic acid transmembrane transporte... 4 0.03 1 0.0309
MF GO:0016627 oxidoreductase activity, acting on the C... 5 0.04 1 0.0385
MF GO:0016410 N-acyltransferase activity 6 0.05 1 0.0460

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