Desulfovibrio vulgaris Hildenborough Module 15 Residual: 0.50 | Syntrophy Portal

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Summary

Residual: 0.50 Score: -31.8281 version: dvh_cmonkey_11_Mar_02

Members

DVU0022 HAMP domain/GGDEF domain/EAL domain protein Details for DVU0022 - HAMP domain/GGDEF domain/EAL domain protein GO Terms: GO:0016021, GO:0004871 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0022 Tuberculist Genomic Region	DVU2502 UDP-N-acetylenolpyruvoylglucosamine reductase Details for DVU2502 - UDP-N-acetylenolpyruvoylglucosamine reductase GO Terms: GO:0008762, GO:0007049, GO:0051301, GO:0071555, GO:0005737, GO:0050660, GO:0009252, GO:0008360 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2502 Tuberculist Genomic Region
DVU0117 Glycosyl transferase, group 2 family protein Details for DVU0117 - Glycosyl transferase, group 2 family protein GO Terms: GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0117 Tuberculist Genomic Region	DVU2661 Twin-arginine translocation pathway signal sequence domain protein Details for DVU2661 - Twin-arginine translocation pathway signal sequence domain protein GO Terms: GO:0005507 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2661 Tuberculist Genomic Region
DVU0286 Imidazole glycerol phosphate synthase subunit HisF Details for DVU0286 - Imidazole glycerol phosphate synthase subunit HisF GO Terms: GO:0005737, GO:0000105, GO:0000107, GO:0016829 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0286 Tuberculist Genomic Region	DVU2736 Uncharacterized protein Details for DVU2736 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2736 Tuberculist Genomic Region
DVU0539 Sigma-54 dependent DNA-binding response regulator Details for DVU0539 - Sigma-54 dependent DNA-binding response regulator GO Terms: GO:0005524, GO:0000160, GO:0006355, GO:0043565, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0539 Tuberculist Genomic Region	DVU2906 UmuC protein Details for DVU2906 - UmuC protein GO Terms: GO:0006281, GO:0003887, GO:0003684 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2906 Tuberculist Genomic Region
DVU0621 Sigma-54 dependent DNA-binding response regulator Details for DVU0621 - Sigma-54 dependent DNA-binding response regulator GO Terms: GO:0005524, GO:0003677, GO:0000160, GO:0006355, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0621 Tuberculist Genomic Region	DVU2994 Glycosyl transferase, group 2 family protein Details for DVU2994 - Glycosyl transferase, group 2 family protein GO Terms: GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2994 Tuberculist Genomic Region
DVU0681 Sensor histidine kinase/response regulator Details for DVU0681 - Sensor histidine kinase/response regulator GO Terms: GO:0016020, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0681 Tuberculist Genomic Region	DVU3000 Uncharacterized protein Details for DVU3000 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3000 Tuberculist Genomic Region
DVU0807 tRNA-specific 2-thiouridylase MnmA Details for DVU0807 - tRNA-specific 2-thiouridylase MnmA GO Terms: GO:0005524, GO:0005737, GO:0016783, GO:0000049, GO:0006400 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0807 Tuberculist Genomic Region	DVU3007 Uncharacterized protein Details for DVU3007 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3007 Tuberculist Genomic Region
DVU1163 Major facilitator superfamily protein Details for DVU1163 - Major facilitator superfamily protein GO Terms: GO:0016021, GO:0055085 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1163 Tuberculist Genomic Region	DVU3128 Lipoprotein, putative Details for DVU3128 - Lipoprotein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3128 Tuberculist Genomic Region
DVU2023 Uncharacterized protein Details for DVU2023 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2023 Tuberculist Genomic Region	DVUA0125 Transglycosylase, SLT family Details for DVUA0125 - Transglycosylase, SLT family GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0125 Tuberculist Genomic Region
DVU2041 Uncharacterized protein Details for DVU2041 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2041 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 3200 Motif 2:

e-value: 17000

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU2086 Transcriptional regulator, GntR family	up-regulates	0.21	DVU2086
DVU2547 Transcriptional regulator, putative	up-regulates	0.24	DVU2547
DVU3142 Sigma-54 dependent transcriptional regulator	up-regulates	0.26	DVU3142

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0006281	DNA repair	5	0.01	1	0.0140
BP	GO:0006974	cellular response to DNA damage stimulus	5	0.01	1	0.0140
BP	GO:0033554	cellular response to stress	8	0.02	1	0.0220
BP	GO:0006259	DNA metabolic process	17	0.05	1	0.0460

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0005507	copper ion binding	3	0.02	1	0.0160
MF	GO:0008762	UDP-N-acetylmuramate dehydrogenase activ...	5	0.03	1	0.0270

Essentiality

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