Methanococcus maripaludis S2 Module 92 Residual: 0.41

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Summary

Residual: 0.41 Score: -11.4167 version: mmp_cmonkey_11_Oct_11

Members

MMP0530 hypothetical protein (NCBI)

Details for MMP0530 - hypothetical protein (NCBI)

GO Terms: GO:0016779

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0530

Tuberculist Genomic Region

MMP1511 Sodium:alanine symporter (NCBI)

Details for MMP1511 - Sodium:alanine symporter (NCBI)

GO Terms: GO:0006814, GO:0016020, GO:0005283

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1511

Tuberculist Genomic Region

MMP0566 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II related protein (NCBI)

Details for MMP0566 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II related protein (NCBI)

GO Terms: GO:0008152, GO:0005783, GO:0003824

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0566

Tuberculist Genomic Region

MMP0026 DNA-directed DNA polymerase II large subunit (NCBI)

Details for MMP0026 - DNA-directed DNA polymerase II large subunit (NCBI)

GO Terms: GO:0006308, GO:0006260, GO:0003677, GO:0003893, GO:0016449, GO:0019984, GO:0003889, GO:0003894, GO:0015999, GO:0016450, GO:0003890, GO:0003895, GO:0016000, GO:0016451, GO:0003891, GO:0016448, GO:0016452

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0026

Tuberculist Genomic Region

MMP0943 glycerol-3-phosphate cytidyltransferase (NCBI)

Details for MMP0943 - glycerol-3-phosphate cytidyltransferase (NCBI)

GO Terms: GO:0009058, GO:0016779

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0943

Tuberculist Genomic Region

MMP0639 LSU ribosomal protein L23E (NCBI)

Details for MMP0639 - LSU ribosomal protein L23E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0639

Tuberculist Genomic Region

MMP1361 DNA-directed RNA polymerase subunit B (NCBI)

Details for MMP1361 - DNA-directed RNA polymerase subunit B (NCBI)

GO Terms: GO:0006350, GO:0003902, GO:0003900, GO:0003677, GO:0003899, GO:0003901

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1361

Tuberculist Genomic Region

MMP0640 SSU ribosomal protein S28E (NCBI)

Details for MMP0640 - SSU ribosomal protein S28E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0640

Tuberculist Genomic Region

MMP0043 isopentenyl-diphosphate delta-isomerase related protein (NCBI)

Details for MMP0043 - isopentenyl-diphosphate delta-isomerase related protein (NCBI)

GO Terms: GO:0006118, GO:0008299, GO:0005737, GO:0016491, GO:0004452, GO:0010181

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0043

Tuberculist Genomic Region

MMP0641 Ribosomal protein L7AE:Ribosomal protein L7Ae/L30e/S12e/Gadd45 (NCBI)

Details for MMP0641 - Ribosomal protein L7AE:Ribosomal protein L7Ae/L30e/S12e/Gadd45 (NCBI)

GO Terms: GO:0006412, GO:0042254, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0641

Tuberculist Genomic Region

MMP0099 General substrate transporter (NCBI)

Details for MMP0099 - General substrate transporter (NCBI)

GO Terms: GO:0015904, GO:0046677, GO:0016021, GO:0015520

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0099

Tuberculist Genomic Region

MMP0760 hypothetical protein (NCBI)

Details for MMP0760 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0760

Tuberculist Genomic Region

MMP0134 Conserved hypothetical protein (NCBI)

Details for MMP0134 - Conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0134

Tuberculist Genomic Region

MMP1289 Ribosomal protein L10E (NCBI)

Details for MMP1289 - Ribosomal protein L10E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1289

Tuberculist Genomic Region

MMP0405 GTP cyclohydrolase III (NCBI)

Details for MMP0405 - GTP cyclohydrolase III (NCBI)

GO Terms: GO:0009058, GO:0043740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0405

Tuberculist Genomic Region

MMP1319 SSU ribosomal protein S13 (NCBI)

Details for MMP1319 - SSU ribosomal protein S13 (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003723, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1319

Tuberculist Genomic Region

MMP0457 Probable ATP dependent RNA helicase (NCBI)

Details for MMP0457 - Probable ATP dependent RNA helicase (NCBI)

GO Terms: GO:0003676, GO:0003677, GO:0005524, GO:0008026

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0457

Tuberculist Genomic Region

MMP1443 GTP1/OBG family:ATP/GTP-binding site motif A (P-loop):TGS domain:Small GTP-binding protein domain (NCBI)

Details for MMP1443 - GTP1/OBG family:ATP/GTP-binding site motif A (P-loop):TGS domain:Small GTP-binding protein domain (NCBI)

GO Terms: GO:0015684, GO:0005622, GO:0016021, GO:0009276, GO:0005525, GO:0015093

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1443

Tuberculist Genomic Region

MMP0682 conserved hypothetical protein (NCBI)

Details for MMP0682 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0682

Tuberculist Genomic Region

MMP1480 aconitase Family (NCBI)

Details for MMP1480 - aconitase Family (NCBI)

GO Terms: GO:0009098, GO:0051539, GO:0003861

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1480

Tuberculist Genomic Region

MMP0695 proteasome, subunit beta (NCBI)

Details for MMP0695 - proteasome, subunit beta (NCBI)

GO Terms: GO:0006511, GO:0005839, GO:0004175, GO:0004298, GO:0004299

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0695

Tuberculist Genomic Region

MMP1543 LSU Ribosomal protein L3P (NCBI)

Details for MMP1543 - LSU Ribosomal protein L3P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1543

Tuberculist Genomic Region

MMP0975 possible molybdenum ABC transporter, solute-binding protein (NCBI)

Details for MMP0975 - possible molybdenum ABC transporter, solute-binding protein (NCBI)

GO Terms: GO:0006810, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0975

Tuberculist Genomic Region

MMP1710 conserved hypothetical archeal protein (NCBI)

Details for MMP1710 - conserved hypothetical archeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1710

Tuberculist Genomic Region

MMP1211

Details for MMP1211 -

GO Terms: GO:0008299, GO:0004421

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1211

Tuberculist Genomic Region

MMP0036 Transcription factor E (NCBI)

Details for MMP0036 - Transcription factor E (NCBI)

GO Terms: GO:0006367, GO:0005673, GO:0003702

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0036

Tuberculist Genomic Region

MMP1379 Thymidylate synthase (NCBI)

Details for MMP1379 - Thymidylate synthase (NCBI)

GO Terms: GO:0006231, GO:0050757, GO:0004799

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1379

Tuberculist Genomic Region

MMP1400 M. jannaschii predicted coding region MJ0458.1 (NCBI)

Details for MMP1400 - M. jannaschii predicted coding region MJ0458.1 (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1400

Tuberculist Genomic Region

MMP1380 Chlorohydrolase (NCBI)

Details for MMP1380 - Chlorohydrolase (NCBI)

GO Terms: GO:0016787, GO:0016810

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1380

Tuberculist Genomic Region

MMP1403 LSU ribosomal protein L22P (NCBI)

Details for MMP1403 - LSU ribosomal protein L22P (NCBI)

GO Terms: GO:0006412, GO:0015934, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1403

Tuberculist Genomic Region

MMP1381 Beta-lactamase-like:ATP/GTP-binding site motif A (P-loop) (NCBI)

Details for MMP1381 - Beta-lactamase-like:ATP/GTP-binding site motif A (P-loop) (NCBI)

GO Terms: GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1381

Tuberculist Genomic Region

MMP1444 Metallopeptidase family M24:Methionine aminopeptidase:Methionine aminopeptidase, subfamily 2 (NCBI)

Details for MMP1444 - Metallopeptidase family M24:Methionine aminopeptidase:Methionine aminopeptidase, subfamily 2 (NCBI)

GO Terms: GO:0006508, GO:0004239

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1444

Tuberculist Genomic Region

MMP1396 Aminotransferase (subgroup I) (NCBI)

Details for MMP1396 - Aminotransferase (subgroup I) (NCBI)

GO Terms: GO:0009058, GO:0004069, GO:0016847, GO:0016769, GO:0030170

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1396

Tuberculist Genomic Region

Displaying 1 - 33 of 33

Motifs

Motif 1: e-value: 390 e-value: 3300

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0257

TATA-binding protein (TBP) (NCBI)
 down-regulates -0.39

MMP0257

MMP0907

predicted archaeal transcriptional regulator (NCBI)
 up-regulates 0.35

MMP0907

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)
 down-regulates -0.29

MMP0052

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0257

TATA-binding protein (TBP) (NCBI)
 up-regulates 0.11

MMP0052

MMP0257

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0016070 RNA metabolic process 12 0.19 2 0.0100
BP GO:0090304 nucleic acid metabolic process 17 0.27 2 0.0210
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0019843 rRNA binding 26 0.57 3 0.0170

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