Organism : Bacillus subtilis | Module List :
Na+/H+ antiporter (RefSeq)
Functional Annotations (5)
|NhaP-type Na+/H+ and K+/H+ antiporters||cog/ cog|
|regulation of pH||go/ biological_process|
|solute:hydrogen antiporter activity||go/ molecular_function|
|integral to membrane||go/ cellular_component|
Regulation information for BSU33420(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for BSU33420
Module neighborhood information for BSU33420
|Gene||Common Name||Description||Module membership|
|BSU00180||tadA||tRNA specific adenosine deaminase (RefSeq)||111, 123|
|BSU01560||kbaA||inner membrane protein involved in activation of the KinB signaling pathway to sporulation (RefSeq)||31, 359|
|BSU04550||ydbP||putative thioredoxin or thiol-disulfide isomerase (RefSeq)||123, 373|
|BSU04610||ydcA||hypothetical protein (RefSeq)||115, 123|
|BSU05660||ydgI||putative dehydrogenase (RefSeq)||123, 262|
|BSU05670||ydgJ||putative transcriptional regulator (MarR family) (RefSeq)||123, 262|
|BSU05950||ydiF||putative ABC transporter (ATP-binding protein) (RefSeq)||123, 373|
|BSU07490||yfmF||iron-dicitrate ABC transporter (ATP-binding protein) (RefSeq)||31, 151|
|BSU07660||yflJ||hypothetical protein (RefSeq)||123, 129|
|BSU07670||yflI||hypothetical protein (RefSeq)||123, 151|
|BSU08210||malQ||maltose and maltodextrin ABC transporter subunit (ATP-binding protein) (RefSeq)||123, 296|
|BSU08880||rpsN||30S ribosomal protein S14 (RefSeq)||123, 200|
|BSU09550||yhdP||putative transporter or sensor (RefSeq)||31, 259|
|BSU09560||cueR||copper efflux transcriptional regulator (RefSeq)||31, 354|
|BSU09860||khtT||K+/H+ antiporter for K+ efflux (RefSeq)||31, 70|
|BSU09870||khtS||K+/H+ antiporter for K+ efflux (RefSeq)||31, 70|
|BSU10040||ecsA||ABC transporter (ATP-binding protein) (RefSeq)||31, 381|
|BSU10050||ecsB||ABC transporter (membrane protein) (RefSeq)||31, 341|
|BSU10480||yhjE||putative integral inner membrane protein (RefSeq)||123, 262|
|BSU10490||sipV||type I signal peptidase (RefSeq)||123, 262|
|BSU11630||yjbP||bis(5'-nucleosyl)-tetraphosphatase PrpE (RefSeq)||31, 378|
|BSU11640||yjbQ||putative Na+/H+ antiporter (RefSeq)||123, 378|
|BSU11970||yjcS||hypothetical protein (RefSeq)||31, 274|
|BSU13150||ohrR||transcriptional regulator sensing organic peroxides (RefSeq)||111, 123|
|BSU15060||ylbM||hypothetical protein (RefSeq)||111, 123|
|BSU15110||ylbQ||2-dehydropantoate 2-reductase (RefSeq)||123, 378|
|BSU22940||prsW||protease required for RsiW anti-sigma(W) degradation (RefSeq)||123, 311|
|BSU23990||yqiW||hypothetical protein (RefSeq)||31, 78|
|BSU25060||yqfZ||factor involved in motility (RefSeq)||123, 239|
|BSU25110||yqfU||putative integral inner membrane protein (RefSeq)||116, 123|
|BSU25850||yqzI||hypothetical protein; skin element (RefSeq)||31, 379|
|BSU25860||yqcG||putative phage DNA manipulating enzyme; skin element (RefSeq)||31, 91|
|BSU25870||yqcF||hypothetical protein; skin element (RefSeq)||31, 91|
|BSU26450||yrkN||putative N-acetyltransferase (RefSeq)||31, 263|
|BSU27000||yraB||putative transcriptional regulator (MerR family) (RefSeq)||123, 200|
|BSU27880||nifS||cysteine desulfurase (RefSeq)||15, 123|
|BSU29620||hisJ||histidinol-phosphatase (RefSeq)||31, 53|
|BSU31160||yubA||putative integral inner membrane protein (RefSeq)||31, 63|
|BSU31780||yueH||hypothetical protein (RefSeq)||31, 160|
|BSU31810||yuzE||hypothetical protein (RefSeq)||31, 378|
|BSU31910||yukE||hypothetical protein (RefSeq)||31, 296|
|BSU32960||yusY||hypothetical protein (RefSeq)||31, 262|
|BSU32970||yusY||hypothetical protein (RefSeq)||31, 52|
|BSU33420||nhaK||Na+/H+ antiporter (RefSeq)||31, 123|
|BSU35090||yvmA||putative efflux transporter (RefSeq)||123, 378|
|BSU35140||yvkN||hypothetical protein (RefSeq)||31, 166|
|BSU37140||ywjG||putative oxidoreductase (RefSeq)||123, 378|
|BSU37550||ywhA||putative transcriptional regulator (MarR family) (RefSeq)||111, 123|
|BSU37640||ywfL||hypothetical protein (RefSeq)||7, 31|
|BSU37650||cysL||regulator of sulfur assimilation CysL, activates cysJI expression (RefSeq)||31, 353|
|BSU37680||ywfH||carrier protein reductase of bacilysin synthesis (RefSeq)||123, 350|
|BSU38030||ywdA||hypothetical protein (RefSeq)||31, 263|
|BSU38550||ywaA||branched-chain amino acid aminotransferase (RefSeq)||123, 145|
|BSU38950||yxjH||putative methyl-tetrahydrofolate methyltransferase (RefSeq)||28, 123|
|BSU38960||yxjG||putative methyltetrahydrofolate methyltransferase (RefSeq)||28, 123|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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