Organism : Clostridium acetobutylicum | Module List :
Methyl-accepting chemotaxis protein (NCBI ptt file)
Functional Annotations (5)
|Methyl-accepting chemotaxis protein||cog/ cog|
|signal transducer activity||go/ molecular_function|
|signal transduction||go/ biological_process|
Regulation information for CAC0381(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for CAC0381
Module neighborhood information for CAC0381
|Gene||Common Name||Description||Module membership|
|CAC0347||CAC0347||Hypothetical protein (NCBI ptt file)||309, 344|
|CAC0381||CAC0381||Methyl-accepting chemotaxis protein (NCBI ptt file)||74, 344|
|CAC0457||CAC0457||Transcriptional regulator, AcrR family (NCBI ptt file)||74, 344|
|CAC0549||CAC0549||Predicted transcriptional regulator (NCBI ptt file)||74, 261|
|CAC0583||CAC0583||CBIK protein (chain A, anaerobic cobalt chelatase) (NCBI ptt file)||117, 344|
|CAC0647||CAC0647||Predicted membrane protein (NCBI ptt file)||149, 344|
|CAC0814||CAC0814||3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file)||244, 344|
|CAC0859||CAC0859||Ortholog putative anti-SigV factor [Bacillus subtilis] (NCBI ptt file)||69, 344|
|CAC0881||CAC0881||Hypothetical protein (NCBI ptt file)||267, 344|
|CAC1005||CAC1005||Uncharacterized protein similar to Cylindrotheca fusiformis plasmid hypothetical protein (GI:99319) (NCBI ptt file)||74, 140|
|CAC1145||CAC1145||Hypothetical protein (NCBI ptt file)||326, 344|
|CAC1317||CAC1317||Potassium channel subunit (NCBI ptt file)||117, 344|
|CAC1493||CAC1493||Zn-finger DNA-binding domain (NCBI ptt file)||71, 74|
|CAC1578||CAC1578||Predicted transcriptional regulator (NCBI ptt file)||74, 89|
|CAC1597||CAC1597||Zn-finger DNA-binding domain (NCBI ptt file)||74, 89|
|CAC1598||CAC1598||Hypothetical protein, CF-32 family (NCBI ptt file)||74, 89|
|CAC1827||CAC1827||TldD-like protein fragment (NCBI ptt file)||74, 309|
|CAC2605||CAC2605||Transcriptional regulator (TetR/AcrR family) (NCBI ptt file)||74, 89|
|CAC2705||CAC2705||Uncharacterized membrane protein, homolog of Aquifex (GI:2984271) (NCBI ptt file)||74, 344|
|CAC2730||CAC2730||Signal transduction histidine kinase (NCBI ptt file)||74, 157|
|CAC2733||CAC2733||Uncharacterized conserved membrane protein (NCBI ptt file)||69, 74|
|CAC2735||CAC2735||Response regulator (CheY-like receiver domain and HTH-type DNA-binding) (NCBI ptt file)||74, 287|
|CAC2817||CAC2817||Predicted membrane protein (NCBI ptt file)||74, 89|
|CAC2877||CAC2877||ABC-type iron (III) transport system, ATPase component (NCBI ptt file)||69, 344|
|CAC3085||CAC3085||TPR-repeat-containing protein; Cell-adhesion domain (NCBI ptt file)||225, 344|
|CAC3086||CAC3086||Protein containing cell adhesion domain (NCBI ptt file)||225, 344|
|CAC3168||CAC3168||Predicted membrane protein (NCBI ptt file)||62, 344|
|CAC3293||CAC3293||Uncharacterized conserved membrane protein (NCBI ptt file)||74, 132|
|CAC3345||CAC3345||Transcriptional regulator, AcrR family (NCBI ptt file)||74, 89|
|CAC3406||CAC3406||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||140, 344|
|CAC3413||CAC3413||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||89, 344|
|CAC3433||CAC3433||Transcriptional regulators, AcrR family (NCBI ptt file)||150, 344|
|CAC3434||CAC3434||Hypothetical protein (NCBI ptt file)||205, 344|
|CAC3489||CAC3489||Hypothetical protein (NCBI ptt file)||69, 74|
|CAC3494||CAC3494||Transcription regulator, YOBV B.subtilis homolog (NCBI ptt file)||102, 344|
|CAC3512||CAC3512||AraC-type DNA-binding domain-containing protein (NCBI ptt file)||74, 140|
|CAC3588||CAC3588||DNA replication protein DnaC (NCBI ptt file)||74, 157|
|CAC3606||CAC3606||Transcriptional regulator, AcrR family (NCBI ptt file)||74, 216|
|CAC3651||CAC3651||Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) (NCBI ptt file)||74, 89|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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