Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC1145(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC1145
|Gene||Common Name||Description||Module membership|
|CAC0347||CAC0347||Hypothetical protein (NCBI ptt file)||309, 344|
|CAC0381||CAC0381||Methyl-accepting chemotaxis protein (NCBI ptt file)||74, 344|
|CAC0394||kdgA||Deoxyphosphogluconate aldolase (gene kdgA) (NCBI ptt file)||83, 326|
|CAC0457||CAC0457||Transcriptional regulator, AcrR family (NCBI ptt file)||74, 344|
|CAC0583||CAC0583||CBIK protein (chain A, anaerobic cobalt chelatase) (NCBI ptt file)||117, 344|
|CAC0647||CAC0647||Predicted membrane protein (NCBI ptt file)||149, 344|
|CAC0718||CAC0718||Ortholog ycnD B.subtilis, nitroreductase (NCBI ptt file)||83, 326|
|CAC0812||CAC0812||Pectate lyase related protein, secreted (NCBI ptt file)||108, 326|
|CAC0814||CAC0814||3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file)||244, 344|
|CAC0859||CAC0859||Ortholog putative anti-SigV factor [Bacillus subtilis] (NCBI ptt file)||69, 344|
|CAC0881||CAC0881||Hypothetical protein (NCBI ptt file)||267, 344|
|CAC1018||CAC1018||Predicted membrane protein (NCBI ptt file)||287, 326|
|CAC1145||CAC1145||Hypothetical protein (NCBI ptt file)||326, 344|
|CAC1161||CAC1161||Predicted ATPase of HSP70 class (NCBI ptt file)||187, 326|
|CAC1198||recJ||Single-stranded-DNA-specific exonuclease (recJ) (NCBI ptt file)||187, 326|
|CAC1317||CAC1317||Potassium channel subunit (NCBI ptt file)||117, 344|
|CAC1424||CAC1424||Zn-dependent hydrolase, glyoxylase II family (NCBI ptt file)||287, 326|
|CAC1548||trxB||Thioredoxin reductase (NCBI ptt file)||227, 326|
|CAC1657||CAC1657||Uncharacterized conserved protein, yisX B.subtilis ortholog (NCBI ptt file)||279, 326|
|CAC1658||CAC1658||Phospholipase D family protein (NCBI ptt file)||73, 326|
|CAC1670||CAC1670||Response regulator (CheY-like receiver domain and DNA-binding HTH domain) (NCBI ptt file)||185, 326|
|CAC1671||CAC1671||Predicted ATPase related to the helicase subunit of the Holliday junction resolvase (NCBI ptt file)||291, 326|
|CAC1672||CAC1672||Rad3-related DNA helicase (NCBI ptt file)||291, 326|
|CAC1970||CAC1970||Hypothetical protein (NCBI ptt file)||185, 326|
|CAC2178||CAC2178||Predicted CDP-4-keto-6-deoxy-D-glucose-3-dehydrase (NCBI ptt file)||326, 336|
|CAC2495||CAC2495||Predicted transcriptional regulator (NCBI ptt file)||258, 326|
|CAC2545||CAC2545||Hypothetical protein (NCBI ptt file)||70, 326|
|CAC2684||CAC2684||Sugar kinase, ribokinase family (NCBI ptt file)||83, 326|
|CAC2705||CAC2705||Uncharacterized membrane protein, homolog of Aquifex (GI:2984271) (NCBI ptt file)||74, 344|
|CAC2877||CAC2877||ABC-type iron (III) transport system, ATPase component (NCBI ptt file)||69, 344|
|CAC3085||CAC3085||TPR-repeat-containing protein; Cell-adhesion domain (NCBI ptt file)||225, 344|
|CAC3086||CAC3086||Protein containing cell adhesion domain (NCBI ptt file)||225, 344|
|CAC3168||CAC3168||Predicted membrane protein (NCBI ptt file)||62, 344|
|CAC3406||CAC3406||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||140, 344|
|CAC3413||CAC3413||Transcriptional regulator, MarR/EmrR family (NCBI ptt file)||89, 344|
|CAC3433||CAC3433||Transcriptional regulators, AcrR family (NCBI ptt file)||150, 344|
|CAC3434||CAC3434||Hypothetical protein (NCBI ptt file)||205, 344|
|CAC3478||CAC3478||Predicted membrane protein (NCBI ptt file)||207, 326|
|CAC3494||CAC3494||Transcription regulator, YOBV B.subtilis homolog (NCBI ptt file)||102, 344|
|CAC3516||CAC3516||Membrane-associated histidine kinase with HAMP domain (NCBI ptt file)||261, 326|
|CAC3517||CAC3517||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||217, 326|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Regulation tab for each gene includes regulatory influences such as environmental factors or transcription factors or their combinations identified by regulatory network inference algorithms.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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