Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC0812(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC0812
|Gene||Common Name||Description||Module membership|
|CAC0071||CAC0071||Uncharacterized conserved protein, YTFE E.coli ortholog (NCBI ptt file)||24, 108|
|CAC0124||CAC0124||Hypothetical protein (NCBI ptt file)||108, 150|
|CAC0145||CAC0145||N-terminal Zn-ribbon domain and C-terminal MutT domain, YJAD ortholog (NCBI ptt file)||92, 108|
|CAC0161||CAC0161||ABC transporter (permease) (NCBI ptt file)||108, 144|
|CAC0295||CAC0295||Metal-dependent amidohydrolases (NCBI ptt file)||108, 190|
|CAC0394||kdgA||Deoxyphosphogluconate aldolase (gene kdgA) (NCBI ptt file)||83, 326|
|CAC0428||CAC0428||Sugar permease (NCBI ptt file)||108, 145|
|CAC0536||dltE||Short-chain dehydrodenase (gene dltE) (NCBI ptt file)||71, 108|
|CAC0718||CAC0718||Ortholog ycnD B.subtilis, nitroreductase (NCBI ptt file)||83, 326|
|CAC0812||CAC0812||Pectate lyase related protein, secreted (NCBI ptt file)||108, 326|
|CAC0921||CAC0921||Metal-dependent amidohydrolase (NCBI ptt file)||24, 108|
|CAC1017||CAC1017||SpoVB related membrane protein (NCBI ptt file)||108, 169|
|CAC1018||CAC1018||Predicted membrane protein (NCBI ptt file)||287, 326|
|CAC1145||CAC1145||Hypothetical protein (NCBI ptt file)||326, 344|
|CAC1161||CAC1161||Predicted ATPase of HSP70 class (NCBI ptt file)||187, 326|
|CAC1198||recJ||Single-stranded-DNA-specific exonuclease (recJ) (NCBI ptt file)||187, 326|
|CAC1424||CAC1424||Zn-dependent hydrolase, glyoxylase II family (NCBI ptt file)||287, 326|
|CAC1492||CAC1492||Uncharacterized protein, YhhW/pirin family (NCBI ptt file)||92, 108|
|CAC1548||trxB||Thioredoxin reductase (NCBI ptt file)||227, 326|
|CAC1657||CAC1657||Uncharacterized conserved protein, yisX B.subtilis ortholog (NCBI ptt file)||279, 326|
|CAC1658||CAC1658||Phospholipase D family protein (NCBI ptt file)||73, 326|
|CAC1670||CAC1670||Response regulator (CheY-like receiver domain and DNA-binding HTH domain) (NCBI ptt file)||185, 326|
|CAC1671||CAC1671||Predicted ATPase related to the helicase subunit of the Holliday junction resolvase (NCBI ptt file)||291, 326|
|CAC1672||CAC1672||Rad3-related DNA helicase (NCBI ptt file)||291, 326|
|CAC1970||CAC1970||Hypothetical protein (NCBI ptt file)||185, 326|
|CAC2178||CAC2178||Predicted CDP-4-keto-6-deoxy-D-glucose-3-dehydrase (NCBI ptt file)||326, 336|
|CAC2495||CAC2495||Predicted transcriptional regulator (NCBI ptt file)||258, 326|
|CAC2545||CAC2545||Hypothetical protein (NCBI ptt file)||70, 326|
|CAC2684||CAC2684||Sugar kinase, ribokinase family (NCBI ptt file)||83, 326|
|CAC2973||kdgA||2-keto-3-deoxy-6-phosphogluconate aldolase, eda/kdgA (NCBI ptt file)||108, 247|
|CAC2997||CAC2997||Uracil-DNA glycosylase (NCBI ptt file)||108, 230|
|CAC3270||CAC3270||Permease, predicted cation efflux pump (NCBI ptt file)||108, 145|
|CAC3380||CAC3380||Metallo-beta-lactamase superfamily hydrolase (NCBI ptt file)||108, 247|
|CAC3398||CAC3398||Uncharacterized conserved protein, YbhB family (NCBI ptt file)||108, 324|
|CAC3399||CAC3399||Predicted transcriptional regulator (NCBI ptt file)||108, 324|
|CAC3474||CAC3474||Predicted MDR-type permease (NCBI ptt file)||108, 356|
|CAC3478||CAC3478||Predicted membrane protein (NCBI ptt file)||207, 326|
|CAC3495||CAC3495||Multimeric flavodoxin WrbA family protein (NCBI ptt file)||108, 288|
|CAC3501||CAC3501||Predicted phosphosugar isomerase (NCBI ptt file)||108, 230|
|CAC3516||CAC3516||Membrane-associated histidine kinase with HAMP domain (NCBI ptt file)||261, 326|
|CAC3517||CAC3517||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||217, 326|
|CAC3523||CAC3523||Hypothetical protein, CF-7 family (NCBI ptt file)||108, 226|
|CAC3649||spoVT||Possible stage V sporulation protein T, transcriptional regulator AbrB homolog (NCBI ptt file)||108, 247|
|CAC3655||CAC3655||Heavy-metal transporting P-type ATPase (NCBI ptt file)||108, 357|
|CAC3677||kdpE||KDP operon transcriptional regulatory protein KdpE (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||108, 247|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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