Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2689(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2689
|Gene||Common Name||Description||Module membership|
|CAC0093||CAC0093||Transcriptional regulators, LysR family (NCBI ptt file)||216, 301|
|CAC0263||serB||Phosphoserine phosphatase related protein (NCBI ptt file)||4, 218|
|CAC0309||CAC0309||Cell wall-associated hydrolase (NCBI ptt file)||4, 86|
|CAC0312||CAC0312||Hypothetical protein (NCBI ptt file)||4, 172|
|CAC0313||CAC0313||Phage shock protein A (NCBI ptt file)||4, 172|
|CAC0372||CAC0372||Sensory transduction histidine kinase (HisKA and HATPase damains) (NCBI ptt file)||216, 224|
|CAC0538||CAC0538||Beta-mannanase ManB-like enzyme, contains ChW-repeats (NCBI ptt file)||4, 205|
|CAC0577||CAC0577||Endo-arabinase related enzyme (family 43 glycosyl hydrolase domain and ricin B-like domain) (NCBI ptt file)||150, 216|
|CAC0690||CAC0690||Endoglucanase, aminopeptidase M42 family (NCBI ptt file)||216, 238|
|CAC0697||CAC0697||Galactose mutarotase related enzyme (NCBI ptt file)||4, 170|
|CAC0722||CAC0722||Predicted membrane protein; CF-9 family (NCBI ptt file)||4, 309|
|CAC0849||CAC0849||Predicted transcriptional regulator (NCBI ptt file)||151, 216|
|CAC0858||CAC0858||Phosphinothricin acetyltransferase (NCBI ptt file)||71, 216|
|CAC1048||CAC1048||Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily (NCBI ptt file)||4, 253|
|CAC1139||CAC1139||Phage related protein, YonO B.subtilis homolog (NCBI ptt file)||4, 16|
|CAC1165||CAC1165||Hypothetical protein (NCBI ptt file)||4, 104|
|CAC1184||CAC1184||Hypothetical protein (NCBI ptt file)||4, 16|
|CAC1215||CAC1215||Hypothetical protein (NCBI ptt file)||4, 176|
|CAC1319||glpF||Glycerol uptake facilitator protein, GLPF (NCBI ptt file)||4, 133|
|CAC1320||glpP||Glycerol-3-phosphate responsive antiterminator (mRNA-binding), GLPP (NCBI ptt file)||4, 86|
|CAC1444||CAC1444||Uncharacterized conserved membrane protein, similar to MDR (VANZ) ORF of Enterococcus (NCBI ptt file)||132, 216|
|CAC1464||CAC1464||UVRA-like protein, probably involved in MDR transport (NCBI ptt file)||4, 166|
|CAC1497||CAC1497||Uncharacterized protein, homolog of YCGL B.subtilis (NCBI ptt file)||216, 240|
|CAC1606||CAC1606||Uncharacterized conserved protein (NCBI ptt file)||4, 73|
|CAC1607||CAC1607||Hypothetical protein (NCBI ptt file)||4, 137|
|CAC2050||CAC2050||Predicted membrane protein (NCBI ptt file)||4, 110|
|CAC2244||CAC2244||HAD superfamily hydrolases, YKRA B.subtilis ortholog (NCBI ptt file)||216, 251|
|CAC2257||CAC2257||Hypothetical protein (NCBI ptt file)||4, 69|
|CAC2322||CAC2322||Hypothetical protein (NCBI ptt file)||4, 351|
|CAC2504||CAC2504||Hypothetical protein (NCBI ptt file)||4, 53|
|CAC2521||CAC2521||Hypothetical protein, CF-41 family (NCBI ptt file)||94, 216|
|CAC2558||CAC2558||Hypothetical protein (NCBI ptt file)||147, 216|
|CAC2689||CAC2689||Uncharacterized protein, YJCM B.subtilis ortholog (NCBI ptt file)||4, 216|
|CAC2760||CAC2760||Membrane-associated sensory histidine kinase with HAMP domain (NCBI ptt file)||132, 216|
|CAC2837||CAC2837||Fusion HD-GYP domain and HD-hydrolase domain (NCBI ptt file)||212, 216|
|CAC2992||CAC2992||Predicted short-chain dehydrogenase (NCBI ptt file)||4, 132|
|CAC3024||CAC3024||acyl-CoA thioesterase family protein (NCBI ptt file)||216, 309|
|CAC3027||CAC3027||Predicted phosphohydrolase (NCBI ptt file)||216, 223|
|CAC3087||CAC3087||Phosphoenolpyruvate-protein kinase (PTS system enzyme I) (NCBI ptt file)||4, 255|
|CAC3264||CAC3264||Uncharacterized conserved protein, YTFJ B.subtilis ortholog (NCBI ptt file)||4, 341|
|CAC3280||CAC3280||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||4, 86|
|CAC3321||CAC3321||Uncharacterized protein homolog of yveG B.subtilis (NCBI ptt file)||185, 216|
|CAC3341||CAC3341||Multimeric flavodoxin WrbA family protein (NCBI ptt file)||4, 341|
|CAC3346||CAC3346||MDR-type permease (NCBI ptt file)||4, 150|
|CAC3371||CAC3371||2-enoate reductase (Two distinct NAD(FAD)-dependent dehydrogenase domains) (NCBI ptt file)||122, 216|
|CAC3430||CAC3430||Membrane associated, signal transduction histidine kinase-like ATPase (NCBI ptt file)||4, 353|
|CAC3484||CAC3484||Short-chain alcohol dehydrogenase family protein (NCBI ptt file)||206, 216|
|CAC3548||CAC3548||Uncharacterized conserved Zn-finger containing protein (NCBI ptt file)||4, 244|
|CAC3597||CAC3597||Rubrerythrin (NCBI ptt file)||4, 57|
|CAC3598||CAC3598||Rubrerythrin (NCBI ptt file)||4, 57|
|CAC3599||CAC3599||Hypothetical protein (NCBI ptt file)||4, 206|
|CAC3606||CAC3606||Transcriptional regulator, AcrR family (NCBI ptt file)||74, 216|
|CAC3607||CAC3607||Possible ketopantoate reductase PanE/ApbA (NCBI ptt file)||83, 216|
|CAC3623||CAC3623||Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) (NCBI ptt file)||4, 30|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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