Organism : Clostridium acetobutylicum | Module List :
Regulation information for CAC2322(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for CAC2322
|Gene||Common Name||Description||Module membership|
|CAC0263||serB||Phosphoserine phosphatase related protein (NCBI ptt file)||4, 218|
|CAC0309||CAC0309||Cell wall-associated hydrolase (NCBI ptt file)||4, 86|
|CAC0312||CAC0312||Hypothetical protein (NCBI ptt file)||4, 172|
|CAC0313||CAC0313||Phage shock protein A (NCBI ptt file)||4, 172|
|CAC0349||CAC0349||Predicted membrane protein (NCBI ptt file)||246, 351|
|CAC0419||CAC0419||Predicted membrane protein (NCBI ptt file)||247, 351|
|CAC0538||CAC0538||Beta-mannanase ManB-like enzyme, contains ChW-repeats (NCBI ptt file)||4, 205|
|CAC0697||CAC0697||Galactose mutarotase related enzyme (NCBI ptt file)||4, 170|
|CAC0698||CAC0698||Predicted hydrolase of the HAD superfamily (NCBI ptt file)||217, 351|
|CAC0722||CAC0722||Predicted membrane protein; CF-9 family (NCBI ptt file)||4, 309|
|CAC1048||CAC1048||Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily (NCBI ptt file)||4, 253|
|CAC1060||CAC1060||Predicted membrane protein (NCBI ptt file)||336, 351|
|CAC1064||CAC1064||TPR-repeat-containing protein (NCBI ptt file)||49, 351|
|CAC1139||CAC1139||Phage related protein, YonO B.subtilis homolog (NCBI ptt file)||4, 16|
|CAC1163||CAC1163||Hypothetical protein (NCBI ptt file)||16, 351|
|CAC1165||CAC1165||Hypothetical protein (NCBI ptt file)||4, 104|
|CAC1167||CAC1167||Hypothetical protein (NCBI ptt file)||246, 351|
|CAC1184||CAC1184||Hypothetical protein (NCBI ptt file)||4, 16|
|CAC1213||CAC1213||Predicted membrane protein (NCBI ptt file)||246, 351|
|CAC1215||CAC1215||Hypothetical protein (NCBI ptt file)||4, 176|
|CAC1319||glpF||Glycerol uptake facilitator protein, GLPF (NCBI ptt file)||4, 133|
|CAC1320||glpP||Glycerol-3-phosphate responsive antiterminator (mRNA-binding), GLPP (NCBI ptt file)||4, 86|
|CAC1409||CAC1409||Predicted membrane protein (NCBI ptt file)||78, 351|
|CAC1464||CAC1464||UVRA-like protein, probably involved in MDR transport (NCBI ptt file)||4, 166|
|CAC1500||CAC1500||Predicted membrane protein (NCBI ptt file)||13, 351|
|CAC1517||CAC1517||Membrane associated sensory transduction histidine kinase (NCBI ptt file)||140, 351|
|CAC1606||CAC1606||Uncharacterized conserved protein (NCBI ptt file)||4, 73|
|CAC1607||CAC1607||Hypothetical protein (NCBI ptt file)||4, 137|
|CAC1848||cmk||Cytidylate kinase (NCBI ptt file)||35, 351|
|CAC1972||CAC1972||Predicted membrane protein (NCBI ptt file)||191, 351|
|CAC2050||CAC2050||Predicted membrane protein (NCBI ptt file)||4, 110|
|CAC2188||CAC2188||Protein containing a domain related to multimeric flavodoxin WrbA family (NCBI ptt file)||351, 355|
|CAC2257||CAC2257||Hypothetical protein (NCBI ptt file)||4, 69|
|CAC2259||CAC2259||Predicted transcriptional regulator of MarR-family (NCBI ptt file)||270, 351|
|CAC2322||CAC2322||Hypothetical protein (NCBI ptt file)||4, 351|
|CAC2341||CAC2341||Collagenase family protease (NCBI ptt file)||51, 351|
|CAC2504||CAC2504||Hypothetical protein (NCBI ptt file)||4, 53|
|CAC2559||CAC2559||Hypothetical protein (NCBI ptt file)||183, 351|
|CAC2566||CAC2566||Possible rRNA methylase (SAM-dependent methyltransferase superfamily), YTQB B.subtilis (NCBI ptt file)||58, 351|
|CAC2689||CAC2689||Uncharacterized protein, YJCM B.subtilis ortholog (NCBI ptt file)||4, 216|
|CAC2698||CAC2698||Hypothetical protein (NCBI ptt file)||5, 351|
|CAC2900||splB||Spore photoproduct lyase, SPL related protein (NCBI ptt file)||132, 351|
|CAC2901||CAC2901||Predicted membrane protein (NCBI ptt file)||298, 351|
|CAC2939||CAC2939||Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) (NCBI ptt file)||258, 351|
|CAC2992||CAC2992||Predicted short-chain dehydrogenase (NCBI ptt file)||4, 132|
|CAC3087||CAC3087||Phosphoenolpyruvate-protein kinase (PTS system enzyme I) (NCBI ptt file)||4, 255|
|CAC3264||CAC3264||Uncharacterized conserved protein, YTFJ B.subtilis ortholog (NCBI ptt file)||4, 341|
|CAC3280||CAC3280||Possible surface protein, responsible for cell interaction; contains cell adhesion domain and ChW-repeats (NCBI ptt file)||4, 86|
|CAC3341||CAC3341||Multimeric flavodoxin WrbA family protein (NCBI ptt file)||4, 341|
|CAC3346||CAC3346||MDR-type permease (NCBI ptt file)||4, 150|
|CAC3391||CAC3391||Membrane associated signal transduction histidine kinase (NCBI ptt file)||51, 351|
|CAC3404||CAC3404||Uncharactecterized conserved membrane protein, possible ABC-type MDR permease (NCBI ptt file)||246, 351|
|CAC3430||CAC3430||Membrane associated, signal transduction histidine kinase-like ATPase (NCBI ptt file)||4, 353|
|CAC3548||CAC3548||Uncharacterized conserved Zn-finger containing protein (NCBI ptt file)||4, 244|
|CAC3597||CAC3597||Rubrerythrin (NCBI ptt file)||4, 57|
|CAC3598||CAC3598||Rubrerythrin (NCBI ptt file)||4, 57|
|CAC3599||CAC3599||Hypothetical protein (NCBI ptt file)||4, 206|
|CAC3623||CAC3623||Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) (NCBI ptt file)||4, 30|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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