Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2255(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2255
|Gene||Common Name||Description||Module membership|
|GSU0023||GSU0023||TPR domain protein (NCBI)||111, 214|
|GSU0087||GSU0087||heterodisulfide reductase, iron-sulfur binding subunit, putative (VIMSS)||126, 214|
|GSU0088||GSU0088||heterodisulfide reductase subunit (VIMSS)||169, 214|
|GSU0090||GSU0090||heterodisulfide reductase subunit (VIMSS)||126, 214|
|GSU0091||GSU0091||heterodisulfide reductase subunit (VIMSS)||126, 214|
|GSU0092||GSU0092||heterodisulfide reductase subunit (NCBI)||127, 214|
|GSU0159||dapA||dihydrodipicolinate synthase (NCBI)||101, 214|
|GSU0320||GSU0320||hypothetical protein (VIMSS)||28, 332|
|GSU0325||GSU0325||general secretion pathway protein H, putative (NCBI)||28, 328|
|GSU0327||hofF||general secretion pathway protein F (NCBI)||28, 263|
|GSU0329||GSU0329||general secretion pathway protein D, putative (VIMSS)||28, 245|
|GSU0674||hcP-1||hydroxylamine reductase (RefSeq)||16, 214|
|GSU0792||GSU0792||conserved hypothetical protein (VIMSS)||22, 214|
|GSU0864||GSU0864||conserved hypothetical protein TIGR00251 (VIMSS)||101, 214|
|GSU0865||GSU0865||cell division protein DivIVA, putative (VIMSS)||111, 214|
|GSU1177||frdA||fumarate reductase, flavoprotein subunit (NCBI)||101, 214|
|GSU1245||GSU1245||fructose-bisphosphate aldolase, class-II, putative (VIMSS)||28, 328|
|GSU1322||ccdA||cytochrome c biogenesis protein CcdA (NCBI)||153, 214|
|GSU1334||GSU1334||cytochrome c family protein (NCBI)||137, 214|
|GSU1555||GSU1555||sensory box histidine kinase/response regulator (VIMSS)||153, 214|
|GSU1607||glyA||Serine hydroxymethyltransferase (VIMSS)||28, 227|
|GSU1628||GSU1628||phosphoglycerate kinase/triosephosphate isomerase (VIMSS)||214, 238|
|GSU1761||GSU1761||cytochrome c family protein (VIMSS)||76, 214|
|GSU2049||argJ||glutamate N-acetyltransferase/amino-acid acetyltransferase (NCBI)||91, 214|
|GSU2255||GSU2255||conserved hypothetical protein (VIMSS)||28, 214|
|GSU2257||GSU2257||conserved hypothetical protein (VIMSS)||28, 277|
|GSU2258||lpxK||tetraacyldisaccharide 4'-kinase (NCBI)||28, 277|
|GSU2259||GSU2259||3-deoxy-D-manno-octulosonic-acid transferase, putative (VIMSS)||28, 277|
|GSU2260||GSU2260||ABC transporter, ATP-binding protein, MsbA family (VIMSS)||28, 214|
|GSU2261||lpxB||lipid A disaccharide synthase (lpxB) (NCBI)||214, 262|
|GSU2262||degT||pleiotropic regulatory protein (NCBI)||28, 214|
|GSU2263||GSU2263||oxidoreductase, Gfo/Idh/MocA family (VIMSS)||3, 28|
|GSU2265||fabZ||(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase (VIMSS)||28, 277|
|GSU2267||GSU2267||outer membrane protein, putative (VIMSS)||28, 277|
|GSU2268||GSU2268||outer membrane protein, putative (VIMSS)||207, 214|
|GSU2269||GSU2269||ABC transporter, ATP-binding protein (VIMSS)||12, 214|
|GSU2271||lysS||lysyl-tRNA synthetase (NCBI)||28, 263|
|GSU2556||GSU2556||peptidase, U32 family (VIMSS)||28, 328|
|GSU2731||ferA||polyheme membrane-associated cytochrome c (NCBI)||195, 214|
|GSU2732||GSU2732||cytochrome c family protein (NCBI)||195, 214|
|GSU2733||GSU2733||hypothetical protein (VIMSS)||195, 214|
|GSU2737||GSU2737||polyheme membrane-associated cytochrome c (VIMSS)||195, 214|
|GSU2739||GSU2739||hypothetical protein (VIMSS)||195, 214|
|GSU3210||nadD||nicotinate (nicotinamide) nucleotide adenylyltransferase (NCBI)||160, 214|
|GSU3408||GSU3408||L-threonine aldolase, low-specificity (VIMSS)||3, 28|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Module Members Tab
Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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