Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0088(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU0088
Module neighborhood information for GSU0088
|Gene||Common Name||Description||Module membership|
|GSU0023||GSU0023||TPR domain protein (NCBI)||111, 214|
|GSU0087||GSU0087||heterodisulfide reductase, iron-sulfur binding subunit, putative (VIMSS)||126, 214|
|GSU0088||GSU0088||heterodisulfide reductase subunit (VIMSS)||169, 214|
|GSU0090||GSU0090||heterodisulfide reductase subunit (VIMSS)||126, 214|
|GSU0091||GSU0091||heterodisulfide reductase subunit (VIMSS)||126, 214|
|GSU0092||GSU0092||heterodisulfide reductase subunit (NCBI)||127, 214|
|GSU0111||atpA||ATP synthase F1, alpha subunit (NCBI)||10, 169|
|GSU0159||dapA||dihydrodipicolinate synthase (NCBI)||101, 214|
|GSU0197||GSU0197||oxidoreductase, short chain dehydrogenase/reductase family (VIMSS)||80, 169|
|GSU0298||GSU0298||sigma-54 dependent DNA-binding response regulator, interruption-C (VIMSS)||116, 169|
|GSU0674||hcP-1||hydroxylamine reductase (RefSeq)||16, 214|
|GSU0792||GSU0792||conserved hypothetical protein (VIMSS)||22, 214|
|GSU0864||GSU0864||conserved hypothetical protein TIGR00251 (VIMSS)||101, 214|
|GSU0865||GSU0865||cell division protein DivIVA, putative (VIMSS)||111, 214|
|GSU0871||GSU0871||radical SAM domain protein/B12 binding domain protein (NCBI)||50, 169|
|GSU1177||frdA||fumarate reductase, flavoprotein subunit (NCBI)||101, 214|
|GSU1322||ccdA||cytochrome c biogenesis protein CcdA (NCBI)||153, 214|
|GSU1334||GSU1334||cytochrome c family protein (NCBI)||137, 214|
|GSU1375||GSU1375||hypothetical protein (VIMSS)||169, 225|
|GSU1496||GSU1496||pilin domain protein (VIMSS)||117, 169|
|GSU1497||GSU1497||hypothetical protein (VIMSS)||117, 169|
|GSU1555||GSU1555||sensory box histidine kinase/response regulator (VIMSS)||153, 214|
|GSU1599||rpmF||ribosomal protein L32 (NCBI)||62, 169|
|GSU1628||GSU1628||phosphoglycerate kinase/triosephosphate isomerase (VIMSS)||214, 238|
|GSU1660||acnB||aconitate hydratase 2 (NCBI)||101, 169|
|GSU1761||GSU1761||cytochrome c family protein (VIMSS)||76, 214|
|GSU1886||yfiA||ribosomal subunit interface protein (NCBI)||169, 238|
|GSU1902||leuD||3-isopropylmalate dehydratase, small subunit, putative (NCBI)||101, 169|
|GSU2049||argJ||glutamate N-acetyltransferase/amino-acid acetyltransferase (NCBI)||91, 214|
|GSU2237||rpoZ||DNA-directed RNA polymerase, omega subunit (NCBI)||169, 228|
|GSU2255||GSU2255||conserved hypothetical protein (VIMSS)||28, 214|
|GSU2260||GSU2260||ABC transporter, ATP-binding protein, MsbA family (VIMSS)||28, 214|
|GSU2261||lpxB||lipid A disaccharide synthase (lpxB) (NCBI)||214, 262|
|GSU2262||degT||pleiotropic regulatory protein (NCBI)||28, 214|
|GSU2268||GSU2268||outer membrane protein, putative (VIMSS)||207, 214|
|GSU2269||GSU2269||ABC transporter, ATP-binding protein (VIMSS)||12, 214|
|GSU2642||GSU2642||cytochrome c family protein (NCBI)||136, 169|
|GSU2645||GSU2645||cytochrome c family protein (NCBI)||169, 215|
|GSU2731||ferA||polyheme membrane-associated cytochrome c (NCBI)||195, 214|
|GSU2732||GSU2732||cytochrome c family protein (NCBI)||195, 214|
|GSU2733||GSU2733||hypothetical protein (VIMSS)||195, 214|
|GSU2737||GSU2737||polyheme membrane-associated cytochrome c (VIMSS)||195, 214|
|GSU2739||GSU2739||hypothetical protein (VIMSS)||195, 214|
|GSU2998||GSU2998||nitroimidazole resistance protein, putative (VIMSS)||89, 169|
|GSU3005||thiC-2||thiamine biosynthesis protein ThiC (NCBI)||101, 169|
|GSU3007||GSU3007||phosphoglycerate mutase family, putative (VIMSS)||101, 169|
|GSU3009||cobT||nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (NCBI)||101, 169|
|GSU3210||nadD||nicotinate (nicotinamide) nucleotide adenylyltransferase (NCBI)||160, 214|
|GSU3278||GSU3278||hypothetical protein (VIMSS)||169, 276|
|GSU3401||GSU3401||branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative (NCBI)||117, 169|
|GSU3402||GSU3402||hypothetical protein (VIMSS)||117, 169|
|GSU3403||GSU3403||hypothetical protein (VIMSS)||117, 169|
|GSU3406||GSU3406||amino acid ABC transporter, periplasmic amino acid-binding protein (NCBI)||117, 169|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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