Organism : Geobacter sulfurreducens | Module List :
3-oxoacyl-(acyl-carrier-protein) synthase II (NCBI)
Functional Annotations (5)
|3-oxoacyl-(acyl-carrier-protein) synthase||cog/ cog|
|catalytic activity||go/ molecular_function|
|biosynthetic process||go/ biological_process|
|Fatty acid biosynthesis||kegg/ kegg pathway|
|Metabolic pathways||kegg/ kegg pathway|
Regulation information for GSU0460(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU0460
Module neighborhood information for GSU0460
|Gene||Common Name||Description||Module membership|
|GSU0083||GSU0083||conserved hypothetical protein TIGR00726 (VIMSS)||3, 40|
|GSU0098||GSU0098||MglB protein (VIMSS)||114, 264|
|GSU0224||GSU0224||conserved hypothetical protein (VIMSS)||40, 258|
|GSU0460||fabF-1||3-oxoacyl-(acyl-carrier-protein) synthase II (NCBI)||40, 114|
|GSU0474||GSU0474||sensory box/GGDEF family protein (VIMSS)||40, 253|
|GSU0501||GSU0501||lipoprotein, putative (VIMSS)||114, 121|
|GSU0520||GSU0520||conserved hypothetical protein (VIMSS)||40, 212|
|GSU0782||GSU0782||nickel-dependent hydrogenase, small subunit (VIMSS)||114, 273|
|GSU0783||GSU0783||nickel-dependent hydrogenase, iron-sulfur cluster-binding protein (VIMSS)||114, 273|
|GSU0784||GSU0784||nickel-dependent hydrogenase, membrane protein (VIMSS)||114, 159|
|GSU0785||GSU0785||nickel-dependent hydrogenase, large subunit (VIMSS)||114, 273|
|GSU0786||GSU0786||hydrogenase maturation protease (VIMSS)||114, 273|
|GSU0787||GSU0787||twin-arginine translocation protein, TatA/E family (NCBI)||114, 159|
|GSU0788||GSU0788||conserved hypothetical protein (VIMSS)||114, 159|
|GSU0794||GSU0794||pyridine nucleotide-disulfide oxidoreductase/rhodanese domain protein (NCBI)||114, 202|
|GSU0997||mutM||formamidopyrimidine-DNA glycosylase (NCBI)||40, 164|
|GSU1087||GSU1087||conserved hypothetical protein (VIMSS)||110, 114|
|GSU1197||GSU1197||RNA methyltransferase, TrmH family, group 2, putative (NCBI)||40, 47|
|GSU1239||gltB||glutamate synthase-related protein (NCBI)||114, 202|
|GSU1249||GSU1249||sensory box histidine kinase (VIMSS)||40, 113|
|GSU1269||GSU1269||hypothetical protein (VIMSS)||40, 159|
|GSU1528||GSU1528||ABC transporter, periplasmic substrate-binding protein (VIMSS)||114, 159|
|GSU1548||GSU1548||hypothetical protein (VIMSS)||40, 253|
|GSU1656||GSU1656||sensory box/response regulator (VIMSS)||17, 114|
|GSU1939||GSU1939||GAF domain/His Kinase A domain/HD domain protein (NCBI)||114, 203|
|GSU2185||GSU2185||flgM family protein (VIMSS)||114, 321|
|GSU2192||cbbZ||phosphoglycolate phosphatase (NCBI)||4, 40|
|GSU2200||GSU2200||hypothetical protein (VIMSS)||40, 289|
|GSU2341||GSU2341||NADH-ubiquinone/plastoquinone family protein (VIMSS)||40, 289|
|GSU2431||GSU2431||membrane protein, putative (NCBI)||40, 49|
|GSU2434||lipB||lipoate-protein ligase B (NCBI)||40, 128|
|GSU2442||GSU2442||RelA/SpoT domain protein (NCBI)||114, 200|
|GSU2451||GSU2451||PilB-related protein (VIMSS)||40, 258|
|GSU2452||GSU2452||copper-translocating P-type ATPase (VIMSS)||40, 59|
|GSU2475||GSU2475||sigma-54 dependent transcriptional regulator (NCBI)||40, 49|
|GSU2541||proC||pyrroline-5-carboxylate reductase (NCBI)||114, 304|
|GSU2575||GSU2575||sensor histidine kinase/response regulator (VIMSS)||40, 141|
|GSU2700||GSU2700||tungstate ABC transporter, periplasmic tungstate-binding protein, putative (NCBI)||114, 319|
|GSU2718||hoxH||NAD-reducing hydrogenase, beta subunit (NCBI)||40, 289|
|GSU2721||hoxF||NAD-reducing hydrogenase, alpha subunit (NCBI)||40, 128|
|GSU2793||GSU2793||hypothetical protein (VIMSS)||114, 187|
|GSU2797||etfB||electron transfer flavoprotein, beta subunit (NCBI)||114, 235|
|GSU3137||GSU3137||cytochrome c family protein (NCBI)||40, 128|
|GSU3446||GSU3446||thioredoxin family protein, selenocysteine-containing (NCBI)||40, 49|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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