Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1817(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU1817
Module neighborhood information for GSU1817
|Gene||Common Name||Description||Module membership|
|GSU0098||GSU0098||MglB protein (VIMSS)||114, 264|
|GSU0144||GSU0144||sensory box histidine kinase (VIMSS)||53, 85|
|GSU0304||pepN||aminopeptidase N (NCBI)||53, 290|
|GSU0388||GSU0388||conserved hypothetical protein (NCBI)||89, 264|
|GSU0476||GSU0476||conserved hypothetical protein (VIMSS)||77, 264|
|GSU0500||typA||GTP-binding protein TypA (NCBI)||53, 320|
|GSU0657||GSU0657||hypothetical protein (VIMSS)||53, 315|
|GSU0681||GSU0681||sensory box histidine kinase (VIMSS)||53, 85|
|GSU0780||GSU0780||formate dehydrogenase accessory protein FdhD (VIMSS)||184, 264|
|GSU0827||GSU0827||hypothetical protein (VIMSS)||27, 53|
|GSU0829||GSU0829||heavy metal efflux pump, CzcB family (VIMSS)||27, 53|
|GSU1036||GSU1036||sensor histidine kinase (VIMSS)||53, 157|
|GSU1117||GSU1117||response regulator (VIMSS)||94, 264|
|GSU1118||GSU1118||universal stress protein family (VIMSS)||264, 276|
|GSU1119||GSU1119||sensor histidine kinase/response regulator (VIMSS)||94, 264|
|GSU1414||GSU1414||sensory box histidine kinase/response regulator (VIMSS)||53, 275|
|GSU1427||GSU1427||anti-anti-sigma factor (VIMSS)||53, 268|
|GSU1430||GSU1430||hypothetical protein (VIMSS)||53, 229|
|GSU1639||GSU1639||Rrf2 family protein (NCBI)||264, 315|
|GSU1640||cydA||cytochrome d ubiquinol oxidase, subunit I (NCBI)||264, 315|
|GSU1641||cydB||cytochrome d ubiquinol oxidase, subunit II (NCBI)||264, 315|
|GSU1642||GSU1642||conserved hypothetical protein (VIMSS)||27, 53|
|GSU1673||GSU1673||hypothetical protein (VIMSS)||53, 200|
|GSU1817||GSU1817||outer membrane lipoprotein, Slp family, putative (VIMSS)||53, 264|
|GSU1857||GSU1857||hypothetical protein (VIMSS)||53, 203|
|GSU1867||GSU1867||hypothetical protein (VIMSS)||258, 264|
|GSU1949||GSU1949||hypothetical protein (VIMSS)||65, 264|
|GSU1989||GSU1989||sigma-54 dependent DNA-binding response regulator (VIMSS)||53, 268|
|GSU1990||GSU1990||sensor histidine kinase (VIMSS)||53, 200|
|GSU1992||GSU1992||transcriptional regulator, Crp/Fnr family (VIMSS)||264, 279|
|GSU2044||GSU2044||sensory box/GGDEF family protein (VIMSS)||100, 264|
|GSU2665||GSU2665||efflux transporter, RND family, MFP subunit (NCBI)||53, 244|
|GSU2666||GSU2666||transcriptional regulator, TetR family (VIMSS)||53, 244|
|GSU2668||GSU2668||hypothetical protein (VIMSS)||53, 244|
|GSU2669||GSU2669||sensor histidine kinase (VIMSS)||53, 244|
|GSU2678||hsp||heat shock protein, Hsp20 family (NCBI)||53, 200|
|GSU2692||GSU2692||immunogenic protein family protein (VIMSS)||53, 194|
|GSU2730||GSU2730||hypothetical protein (NCBI)||113, 264|
|GSU3063||ftsZ||cell division protein FtsZ (NCBI)||230, 264|
|GSU3065||ftsQ||cell division protein FtsQ (NCBI)||200, 264|
|GSU3066||ddl||D-alanine--D-alanine ligase (NCBI)||35, 264|
|GSU3067||murB||UDP-N-acetylenolpyruvoylglucosamine reductase (NCBI)||94, 264|
|GSU3068||murC||UDP-N-acetylmuramate--alanine ligase (NCBI)||94, 264|
|GSU3069||murG||UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (NCBI)||140, 264|
|GSU3070||GSU3070||cell division protein, rodA/ftsW/spoVE family (VIMSS)||60, 264|
|GSU3071||murD||UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI)||95, 264|
|GSU3072||mraY||phospho-N-acetylmuramoyl-pentapeptide-transferase (NCBI)||140, 264|
|GSU3086||GSU3086||conserved hypothetical protein (VIMSS)||53, 258|
|GSU3088||GSU3088||ybaK/ebsC protein (VIMSS)||53, 324|
|GSU3089||rpoD||RNA polymerase sigma factor RpoD (NCBI)||53, 267|
|GSU3095||hisF||imidazoleglycerol phosphate synthase, cyclase subunit (NCBI)||53, 99|
|GSU3139||GSU3139||conserved hypothetical protein (VIMSS)||53, 216|
|GSU3238||GSU3238||Rieske 2Fe-2S family protein (VIMSS)||95, 264|
|GSU3240||GSU3240||radical SAM domain protein (NCBI)||100, 264|
|GSU3246||GSU3246||thioredoxin peroxidase (VIMSS)||264, 315|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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