Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP0426(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 8 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP0426
Module neighborhood information for MMP0426
|Gene||Common Name||Description||Module membership|
|MMP0001||hypothetical protein MMP0001||46, 106, 121, 144|
|MMP0002||L-seryl-tRNA selenium transferase||12, 46, 76, 106, 121|
|MMP0027||TrkA-N domain-containing protein||54, 57|
|MMP0030||MCM family DNA replication protein||106, 117|
|MMP0084||hypothetical protein MMP0084||49, 106|
|MMP0085||hypothetical protein MMP0085||22, 106|
|MMP0091||hypothetical protein MMP0091||51, 106|
|MMP0121||hypothetical protein MMP0121||55, 57|
|MMP0122||hypothetical protein MMP0122||57, 102, 146|
|MMP0128||cyclase family protein||73, 146, 153|
|MMP0193||hypothetical protein MMP0193||144, 153|
|MMP0207||modC||molybdenum ABC transporter ATP-binding protein||57, 153|
|MMP0239||hypothetical protein MMP0239||1, 49, 75, 106|
|MMP0307||hypothetical protein MMP0307||33, 49, 153|
|MMP0420||CBS domain-containing protein||13, 106|
|MMP0425||hypothetical protein MMP0425||57, 102, 106|
|MMP0426||nitroreductase family protein||57, 102, 106, 153|
|MMP0465||hypothetical protein MMP0465||57, 102|
|MMP0499||hypothetical protein MMP0499||22, 28, 144, 146, 153|
|MMP0522||hypothetical protein MMP0522||42, 85, 146, 153|
|MMP0523||ABC transporter ATP-binding protein||42, 85, 146, 153|
|MMP0524||hypothetical protein MMP0524||4, 58, 146, 153, 163|
|MMP0527||hypothetical protein MMP0527||76, 153|
|MMP0531||hypothetical protein MMP0531||106, 140|
|MMP0534||mechanosensitive ion channel MscS||57, 102|
|MMP0535||hypothetical protein MMP0535||57, 102, 106|
|MMP0569||hypothetical protein MMP0569||57, 102|
|MMP0598||phosphoglycerate mutase-related||106, 151|
|MMP0605||putative RNA-processing protein||12, 106|
|MMP0612||LigT||2'-5' RNA ligase||54, 57|
|MMP0621||xylose isomerase domain-containing protein||54, 57|
|MMP0630||feoB||ferrous iron transporter||28, 76, 106, 121|
|MMP0775||hypothetical protein MMP0775||42, 146, 153, 163|
|MMP0808||hypothetical protein MMP0808||12, 106|
|MMP0809||phosphoribosylaminoimidazole carboxylase-like protein||12, 106|
|MMP0871||hypothetical protein MMP0871||22, 153, 166|
|MMP0958||hypothetical protein MMP0958||57, 102, 106|
|MMP0959||trxB||FAD-dependent pyridine nucleotide-disulfide oxidoreductase||57, 102, 106|
|MMP0969||hypothetical protein MMP0969||106, 115|
|MMP0994||hypothetical protein MMP0994||67, 144, 153|
|MMP1001||hypothetical protein MMP1001||57, 102, 106|
|MMP1051||surE||stationary phase survival protein SurE||12, 28, 106|
|MMP1052||hypothetical protein MMP1052||12, 102|
|MMP1060||cysS||cysteinyl-tRNA synthetase||33, 102|
|MMP1069||basic helix-loop-helix dimerization domain-containing protein||106, 115|
|MMP1071||hypothetical protein MMP1071||1, 106|
|MMP1072||aminotransferase (subgroup I) aromatic aminotransferase||1, 106|
|MMP1073||ehbC||putative monovalent cation/H+ antiporter subunit G||35, 106|
|MMP1074||ehbD||hypothetical protein MMP1074||17, 106|
|MMP1091||ADP-glucose pyrophosphorylase||99, 106|
|MMP1124||thiamine-monophosphate kinase||102, 146|
|MMP1202||hypothetical protein MMP1202||104, 153|
|MMP1203||cbiD||cobalt-precorrin-6A synthase||104, 153|
|MMP1234||UBA/THIF-type NAD/FAD binding protein||33, 54, 55, 106|
|MMP1235||moaE||molybdopterin biosynthesis MoaE||49, 55, 106, 117, 150|
|MMP1238||bioB||biotin synthase||1, 153|
|MMP1282||hypothetical protein MMP1282||49, 102, 106, 150|
|MMP1283||hypothetical protein MMP1283||49, 102, 150|
|MMP1469||ehbA||putative monovalent cation/H+ antiporter subunit E||10, 106|
|MMP1494||hypothetical protein MMP1494||104, 153|
|MMP1514||tyrA||prephenate dehydrogenase||57, 102|
|MMP1573||bioD||dethiobiotin synthase||28, 106|
|MMP1578||nicotinamide-nucleotide adenylyltransferase||144, 153|
|MMP1598||hypothetical protein MMP1598||76, 102, 106|
|MMP1611||hypothetical protein MMP1611||21, 106|
|MMP1636||major facilitator transporter||22, 65, 153|
|MMP1641||soluble P-type ATPase||54, 57|
|MMP1682||recJ||single stranded DNA-specific exonuclease||21, 106|
|MMP1712||LysR family transcriptional regulator||19, 106|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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