Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP1241(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 8 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for MMP1241
|Gene||Common Name||Description||Module membership|
|MMP0030||MCM family DNA replication protein||106, 117|
|MMP0052||putative CBS domain-containing signal transduction protein||13, 117|
|MMP0117||hypothetical protein MMP0117||94, 145|
|MMP0119||birA||biotin--acetyl-CoA-carboxylase ligase||1, 75, 142|
|MMP0120||hypothetical protein MMP0120||55, 142|
|MMP0121||hypothetical protein MMP0121||55, 57|
|MMP0153||aksA||trans-homoaconitate synthase||1, 143|
|MMP0154||hypothetical protein MMP0154||1, 13|
|MMP0166||MATE family drug/sodium antiporter||1, 28|
|MMP0167||ABC transporter ATP-binding protein||1, 28|
|MMP0168||ParR family transcriptional regulator||1, 28|
|MMP0176||cell division protein CDC48||1, 46|
|MMP0177||hypothetical protein MMP0177||83, 117, 152|
|MMP0180||ribC||riboflavin synthase||1, 58|
|MMP0225||gldA||glycerol dehydrogenase||117, 142|
|MMP0226||ExsB family transcriptional regulator||13, 117|
|MMP0239||hypothetical protein MMP0239||1, 49, 75, 106|
|MMP0276||hypothetical protein MMP0276||65, 94|
|MMP0289||hypD||hydrogenase expression/formation protein HypD||12, 117|
|MMP0312||hypothetical protein MMP0312||73, 94|
|MMP0327||deoA||thymidine phosphorylase||94, 152|
|MMP0336||hjc||Holliday junction resolvase||13, 94|
|MMP0337||hypothetical protein MMP0337||13, 94|
|MMP0431||rhodopsin-like GPCR superfamily protein||94, 145|
|MMP0432||TatD-like deoxyribonuclease||94, 145|
|MMP0433||putative flavodoxin||94, 145|
|MMP0439||pyrD||dihydroorotate dehydrogenase 1B||117, 119|
|MMP0451||hypothetical protein MMP0451||1, 70|
|MMP0482||hypothetical protein MMP0482||54, 55|
|MMP0483||hypothetical protein MMP0483||54, 55|
|MMP0536||hypothetical protein MMP0536||1, 28|
|MMP0543||hypothetical protein MMP0543||55, 159|
|MMP0544||MoaA/nifB/pqqE family protein||55, 142|
|MMP0545||putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein||55, 142|
|MMP0548||hisB||imidazoleglycerol-phosphate dehydratase||94, 145|
|MMP0549||hypothetical protein MMP0549||94, 145|
|MMP0608||2-hydroxyglutaryl-CoA dehydratase subunit A-like protein||1, 28|
|MMP0638||hypothetical protein MMP0638||54, 55|
|MMP0660||apt||adenine phosphoribosyltransferase||83, 94, 152|
|MMP0677||hypothetical protein MMP0677||94, 145|
|MMP0685||N-6 adenine-specific DNA methylase||1, 144|
|MMP0788||hypothetical protein MMP0788||58, 117|
|MMP0849||L-lysine/ homoserine-homoserine lactone exporter family protein||95, 117|
|MMP0876||cofG||FO synthase subunit 1||1, 129|
|MMP0902||hypothetical protein MMP0902||12, 49, 55|
|MMP0903||hypothetical protein MMP0903||33, 54, 55|
|MMP0992||hypothetical protein MMP0992||55, 117|
|MMP1065||BadM/Rrf2 family transcriptional regulator||55, 152|
|MMP1071||hypothetical protein MMP1071||1, 106|
|MMP1072||aminotransferase (subgroup I) aromatic aminotransferase||1, 106|
|MMP1088||group 1 glycosyl transferase||31, 117|
|MMP1118||hypothetical protein MMP1118||83, 117|
|MMP1145||minD||septum formation inhibitor-activating ATPase||94, 145|
|MMP1185||hydrogen uptake protein:hydrogenase maturation protease HycI||1, 46|
|MMP1234||UBA/THIF-type NAD/FAD binding protein||33, 54, 55, 106|
|MMP1235||moaE||molybdopterin biosynthesis MoaE||49, 55, 106, 117, 150|
|MMP1236||hypothetical protein MMP1236||22, 55, 117, 142, 152|
|MMP1238||bioB||biotin synthase||1, 153|
|MMP1240||Sep-tRNA:Cys-tRNA synthetase||1, 55|
|MMP1241||hypothetical protein MMP1241||1, 55, 94, 117|
|MMP1330||hydrogenase assembly chaperone hypC/hupF||100, 117|
|MMP1372||manB||phosphomannomutase||49, 94, 152|
|MMP1428||hypothetical protein MMP1428||55, 83|
|MMP1447||Cro repressor family protein||22, 117|
|MMP1452||ehaE||hypothetical protein MMP1452||22, 117|
|MMP1453||ehaF||hypothetical protein MMP1453||22, 117|
|MMP1454||ehaG||hypothetical protein MMP1454||66, 117, 133|
|MMP1456||ehaI||hypothetical protein MMP1456||66, 117, 133|
|MMP1459||ehaL||hypothetical protein MMP1459||66, 117, 133|
|MMP1461||ehaN||energy conserving hydrogenase A small subunit||117, 133|
|MMP1487||gapN||aldehyde dehydrogenase||55, 152|
|MMP1548||Fe-S type hydro-lyase tartrate/fumarate subunit beta||94, 145|
|MMP1549||AP endonuclease||1, 94, 152|
|MMP1550||NADP oxidoreductase, coenzyme F420-dependent||1, 58|
|MMP1551||ffh||signal recognition particle protein Srp54||49, 55, 83|
|MMP1605||pyruvate kinase||1, 54, 146, 166|
|MMP1606||flavoprotein:DNA/pantothenate metabolism flavoprotein||1, 13, 49|
|MMP1607||hypothetical protein MMP1607||49, 55, 83|
|MMP1619||molybdenum cofactor biosynthesis protein MoeA||117, 152|
|MMP1662||cbiF||precorrin-4 C11-methyltransferase||66, 117|
|MMP1665||HEAT domain-containing protein||66, 117|
|MMP1679||hypothetical protein MMP1679||117, 151|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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