Module 257 Residual: 0.53

Title Bicluster Model Residual Score
bicluster_0257 v02 0.53 -10.77
Displaying 1 - 13 of 13
Rv0501 UDP-glucose 4-epimerase (EC 5.1.3.2)

Details for Rv0501 - UDP-glucose 4-epimerase (EC 5.1.3.2)

GO Terms: GO:0005576, GO:0005829, GO:0005886

PATRIC Pathways: Galactose metabolism, Amino sugar and nucleotide sugar metabolism

Essentiality: Griffin Essential: 0.96 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv0501

Tuberculist Genomic Region

Rv3144c PPE family protein

Details for Rv3144c - PPE family protein

GO Terms: NA

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.99 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv3144c

Tuberculist Genomic Region

Rv3780

Details for Rv3780 -

GO Terms: GO:0005886

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.01 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv3780

Tuberculist Genomic Region

Rv0502 Phospholipid/glycerol acyltransferase

Details for Rv0502 - Phospholipid/glycerol acyltransferase

GO Terms: GO:0005886

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.26 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv0502

Tuberculist Genomic Region

Rv1297 Transcription termination factor Rho

Details for Rv1297 - Transcription termination factor Rho

GO Terms: GO:0016469, GO:0003715, GO:0006353, GO:0003723, GO:0005524, GO:0015986, GO:0005618, GO:0005886, GO:0040007

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.00 | In vitro Essential: 0.03 | In vivo Essential: NA

Go to Gene Page: Rv1297

Tuberculist Genomic Region

Rv1500 Glycosyl transferase, family 2

Details for Rv1500 - Glycosyl transferase, family 2

GO Terms: NA

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.01 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv1500

Tuberculist Genomic Region

Rv3147 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)

Details for Rv3147 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)

GO Terms: GO:0008137, GO:0005829

PATRIC Pathways: Oxidative phosphorylation

Essentiality: Griffin Essential: 0.59 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv3147

Tuberculist Genomic Region

Rv3150 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)

Details for Rv3150 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)

GO Terms: GO:0008137

PATRIC Pathways: Oxidative phosphorylation

Essentiality: Griffin Essential: 0.03 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv3150

Tuberculist Genomic Region

Rv3152 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)

Details for Rv3152 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)

GO Terms: GO:0008137

PATRIC Pathways: Oxidative phosphorylation

Essentiality: Griffin Essential: 0.06 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv3152

Tuberculist Genomic Region

Rv3153 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)

Details for Rv3153 - NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)

GO Terms: GO:0008137, GO:0005829

PATRIC Pathways: Oxidative phosphorylation

Essentiality: Griffin Essential: 0.16 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv3153

Tuberculist Genomic Region

Rv3155 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)

Details for Rv3155 - NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)

GO Terms: GO:0008137

PATRIC Pathways: Oxidative phosphorylation

Essentiality: Griffin Essential: 0.32 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv3155

Tuberculist Genomic Region

Rv3156 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)

Details for Rv3156 - NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)

GO Terms: GO:0008137, GO:0052572

PATRIC Pathways: Oxidative phosphorylation

Essentiality: Griffin Essential: 0.24 | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: Rv3156

Tuberculist Genomic Region

Rv3648c Cold shock protein CspA

Details for Rv3648c - Cold shock protein CspA

GO Terms: GO:0005618, GO:0040007

PATRIC Pathways: Not assigned

Essentiality: Griffin Essential: 0.12 | In vitro Essential: 0.15 | In vivo Essential: NA

Go to Gene Page: Rv3648c

Tuberculist Genomic Region

Displaying 1 - 1 of 1
Motif 1 Motif 2
e-value: 710 e-value: 1500
Displaying 1 - 1 of 1
Transcriptional regulator, TetR family
regulates 14 modules
Weight: 
0.18
up-regulates
FIG036183: Transcriptional regulator, XRE family
regulates 2 modules
Weight: 
-0.15
down-regulates
DNA-binding response regulator, LuxR family
regulates 29 modules
Weight: 
0.14
up-regulates
Transcriptional regulator, TetR family
regulates 54 modules
Weight: 
0.13
up-regulates
Transcriptional regulator, TetR family
regulates 10 modules
Weight: 
0.13
up-regulates
cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
regulates 28 modules
Weight: 
0.11
up-regulates
RNA polymerase sigma factor SigB
regulates 18 modules
Weight: 
-0.11
down-regulates
HTH-type transcriptional regulator
regulates 17 modules
Weight: 
-0.10
down-regulates
Transcriptional regulator, ArsR family
regulates 13 modules
Weight: 
-0.07
down-regulates
Arsenical resistance operon repressor
regulates 5 modules
Weight: 
-0.06
down-regulates
response regulator
regulates 69 modules
Weight: 
0.04
up-regulates
Transcriptional regulator, ArsR family
regulates 25 modules
Weight: 
-0.03
down-regulates
RNA polymerase sigma factor SigB
regulates 61 modules
Weight: 
0.02
up-regulates
Displaying 1 - 1 of 1
Module GO Term Enrichment Descriptions
GO:0006796 | GO:0006793 phosphate-containing compound metabolic ... | phosphorus metabolic process
Displaying 1 - 14 of 14
GO:0005576 |

extracellular region

GO:0005829 |

cytosol

GO:0005886 |

plasma membrane

GO:0016469 |

proton-transporting two-sector ATPase complex

GO:0003715 |

transcription termination factor activity

GO:0006353 |

DNA-dependent transcription, termination

GO:0003723 |

RNA binding

GO:0005524 |

ATP binding

GO:0015986 |

ATP synthesis coupled proton transport

GO:0005618 |

cell wall

GO:0040007 |

growth

GO:0008137 |

NADH dehydrogenase (ubiquinone) activity

GO:0052572 |

response to host immune response