Rv0047c Transcriptional regulator, PadR family

Rv0047c (Transcriptional regulator, PadR family) is predicted to be co-regulated in modules bicluster_0402 with residual 0.39 and bicluster_0509 with residual 0.59.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 650.00 for bicluster_0402 and 53.00 and 2,600.00 for bicluster_0509 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 221 - 229 of 229
Gene Target Differential Expression Distance Expression pvalue Type
Exported repetitive protein precursor (Cell surface protein pirG) (EXP53)
No -36 -0.44 0.13256 Primary.TSS
Putative uncharacterized protein BCG_3873
No -52 0.1 0.779845 Primary.TSS
POSSIBLE RESOLVASE
No 63 0.52 0.0392427 CDS
Putative ESX-1 secretion system gating protein PPE68
No -39 0.01 0.988963 CDS
No 13 0 0.991765 CDS
MutT/nudix family protein
No 1 -0.05 0.875838 Primary.TSS
RNA polymerase sigma-70 factor, ECF subfamily
No 19 -0.12 0.772489 Primary.TSS
Conserved hypothetical protein
No 0 0.11 0.814765 Primary.TSS
Protein YidD
No -92 0.24 0.570893 CDS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.48 U
D3I 3 3 3.83 10.97 I
D3U 3 3 3.83 11.73 U
D5I 9 5 6.00 8.66 I
D5U 17 5 6.00 9.71 U
D7I 18 7 8.14 9.30 I
D7U 19 7 8.14 10.18 U
D14I 4 14 15.63 4.10 I
D14U 4 14 15.63 8.10 U
D17I 3 17 19.15 I
D17U 3 17 19.15 6.35 U
D21I 4 21 23.23 1.11 I
D21U 4 21 23.23 6.04 U
D24I 3 24 26.60 I
D24U 3 24 26.60 4.50 U
D28I 4 28 30.61 I
D28U 4 28 30.61 4.49 U