Rv0302 TetR/ACRR family transcriptional regulator

Rv0302 (TetR/ACRR family transcriptional regulator) is predicted to be co-regulated in modules bicluster_0140 with residual 0.62 and bicluster_0493 with residual 0.66.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0140 and 0.02 and 25.00 for bicluster_0493 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Displaying 61 - 70 of 99
Gene Target Differential Expression Distance Expression pvalue Type
Haloalkane dehalogenase (EC 3.8.1.5)
No -36 0.07 0.985113 Antisense.TSS
Ferredoxin--sulfite reductase, actinobacterial type (EC 1.8.7.1)
No -101 -0.09 0.987371 Primary.TSS
Protein containing domains DUF403
No -38 0.11 0.985568 CDS
Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)
No -25 0.12 0.985568 Primary.TSS
[Acyl-carrier-protein] acetyl transferase of FASI (EC 2.3.1.38) / Enoyl-[acyl-carrier-protein] reductase of FASI (EC 1.3.1.9) / 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI (EC 4.2.1.61) / [Acyl-carrier-protein] malonyl transferase of FASI (EC 2.3.1.39) / [Acyl-carrier-protein] palmitoyl transferase of FASI (EC 2.3.1.-) / Acyl carrier protein of FASI / 3-oxoacyl-[acyl-carrier-protein] reductase of FASI (EC 1.1.1.100) / 3-oxoacyl-[acyl-carrier-protein] synthase of FASI (EC 2.3.1.41)
No 38 -0.37 0.854651 Primary.TSS
Protein containing transglutaminase-like domain, putative cysteine protease
No 0 0.12 0.987371 Primary.TSS
No -109 -0.39 0.865243 CDS
PROBABLE CONSERVED INTEGRAL MEMBRANE ALANINE AND VALINE AND LEUCINE RICH PROTEIN
No 31 -0.68 0.356224 CDS
Trk system potassium uptake protein TrkA
Repressed -16 -0.86 0.0000345 Primary.TSS
No -13 -0.66 0.346319 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.02 U
D3I 3 3 3.83 10.03 I
D3U 3 3 3.83 9.23 U
D5I 9 5 6.00 10.72 I
D5U 17 5 6.00 10.49 U
D7I 18 7 8.14 10.41 I
D7U 19 7 8.14 9.86 U
D14I 4 14 15.63 7.53 I
D14U 4 14 15.63 7.84 U
D17I 3 17 19.15 7.64 I
D17U 3 17 19.15 7.48 U
D21I 4 21 23.23 7.18 I
D21U 4 21 23.23 7.61 U
D24I 3 24 26.60 6.10 I
D24U 3 24 26.60 6.69 U
D28I 4 28 30.61 6.29 I
D28U 4 28 30.61 7.23 U