Rv0602c Two component DNA binding Transcriptional regulatory protein TcrA

Rv0602c (Two component DNA binding Transcriptional regulatory protein TcrA) is predicted to be co-regulated in modules bicluster_0067 with residual 0.54 and bicluster_0207 with residual 0.51.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 180.00 and 34.00 for bicluster_0067 and 150.00 and 95.00 for bicluster_0207 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 51 - 60 of 75
Gene Target Differential Expression Distance Expression pvalue Type
No -24 0.47 0.518428 Internal.TSS
No 57 0.59 0.154065 CDS
Possible membrane protein
No 12 -0.15 0.723681 CDS
Preprotein translocase subunit YajC (TC 3.A.5.1.1)
No -112 0.14 0.73624 Primary.TSS
Transcriptional regulator, AsnC family
No -2 0.72 0.114782 CDS
Transcriptional regulator, AsnC family
No 40 0.72 0.114782 Internal.TSS
Alanine dehydrogenase (EC 1.4.1.1)
No -47 0.12 0.895839 Primary.TSS
ATPases involved in chromosome partitioning
No -4 0.03 0.974343 Internal.TSS
Translation initiation factor 2
No -15 -0.02 0.96398 Primary.TSS
Transcriptional regulatory protein glnR
No 28 -0.46 0.474171 CDS
not assigned to any KEGG Pathway.
GO:0008150

biological_process

biological_process

Details: 
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO Category: 
biological_process
66
Total items in this category:  
GO:0008150

biological_process

biological_process

Details: 
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO Category: 
biological_process
66
Total items in this category:  
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 12.65 U
D3I 3 3 3.83 12.79 I
D3U 3 3 3.83 12.36 U
D5I 9 5 6.00 11.69 I
D5U 17 5 6.00 11.43 U
D7I 18 7 8.14 13.10 I
D7U 19 7 8.14 12.80 U
D14I 4 14 15.63 12.54 I
D14U 4 14 15.63 12.31 U
D17I 3 17 19.15 12.39 I
D17U 3 17 19.15 12.14 U
D21I 4 21 23.23 12.26 I
D21U 4 21 23.23 12.11 U
D24I 3 24 26.60 12.19 I
D24U 3 24 26.60 12.21 U
D28I 4 28 30.61 11.71 I
D28U 4 28 30.61 12.00 U