Rv0691c Mycofactocin system transcriptional regulator

Rv0691c (Mycofactocin system transcriptional regulator) is predicted to be co-regulated in modules bicluster_0386 with residual 0.48 and bicluster_0486 with residual 0.55.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.11 and 1,000.00 for bicluster_0386 and 500.00 and 840.00 for bicluster_0486 respectively.

These modules are enriched for following go terms: DNA binding, nucleic acid binding.

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 31 - 40 of 113
Gene Target Differential Expression Distance Expression pvalue Type
Alkylated DNA repair protein AlkB
No 37 -0.32 0.999588 CDS
Alkylated DNA repair protein AlkB
No 58 -0.32 0.999588 Internal.TSS
Arginine deiminase (EC 3.5.3.6)
Repressed 0 -1.03 0.00000000000605 Primary.TSS
Methionyl-tRNA synthetase (EC 6.1.1.10)
Repressed -1 -0.94 0.0000131 CDS
Putative deoxyribonuclease YcfH
No -87 -1.03 0.357212 CDS
Transcription elongation factor GreA
No -11 0.19 0.999588 Primary.TSS
omt (omt)
No -73 0.02 0.999588 CDS
No -130 -0.15 0.999588 CDS
No -141 -0.15 0.999588 Internal.TSS
Regulator of polyketide synthase expression
No 56 0.04 0.999588 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 15.13 U
D3I 3 3 3.83 15.03 I
D3U 3 3 3.83 15.34 U
D5I 9 5 6.00 14.07 I
D5U 17 5 6.00 14.28 U
D7I 18 7 8.14 14.39 I
D7U 19 7 8.14 14.80 U
D14I 4 14 15.63 13.68 I
D14U 4 14 15.63 14.08 U
D17I 3 17 19.15 12.34 I
D17U 3 17 19.15 13.49 U
D21I 4 21 23.23 11.83 I
D21U 4 21 23.23 13.41 U
D24I 3 24 26.60 10.46 I
D24U 3 24 26.60 12.62 U
D28I 4 28 30.61 10.15 I
D28U 4 28 30.61 12.38 U