Rv1478 Invasion protein

Summary
Product Feature Type Start End Strand Length AA Length is TF
Rv1478 Invasion protein FALSE

Rv1478 (Invasion protein) is predicted to be co-regulated in modules bicluster_0288 with residual 0.46 and bicluster_0359 with residual 0.50.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.23 and 2,800.00 for bicluster_0288 and 0.00 and 0.00 for bicluster_0359 respectively.

These modules are enriched for following go terms: cellular component biogenesis, cellular component organization or bioge..., carbohydrate binding, acid-amino acid ligase activity .

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Last update: 10/16/2017 - 11:39
BEI Mutant Available BEI Mutant ID BEI MT Number BEI Target ID Order from BEI
Yes NR-17881 MT1525 457
Displaying 1 - 1 of 1
Gene Target Differential Expression Distance Expression pvalue Type
No results were found
Displaying 1 - 2 of 2
ChipSeq TF Differential Expression Distance Expression pvalue Type
Transcriptional regulator, PadR family
No -17 -0.03 0.952016 CDS
ESX-1 secreted protein regulator EspR
Repressed -21 -0.98 0.000000297 Internal.TSS
Motif 1 Motif 2 Residual
bicluster_0288
e.value: 
0.23
Motif Bicluster: 
e.value: 
2800
Motif Bicluster: 
0.46
bicluster_0359
e.value: 
2.4e-25
Motif Bicluster: 
e.value: 
0.000000000042
Motif Bicluster: 
0.50
Product (LegacyBRC) Product (RefSeq)
invasion protein
Operon # Operon
984 -
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics

PATRIC

Not assigned Not assigned
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

not assigned to any KEGG Pathway.
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15608616 NP_215994.1 Run
GO:0005618

cell wall

cell wall

Details: 
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan.
GO Category: 
cellular_component
320
Total items in this category:  
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
Quantitative Proteomics Data
t-test p-value Cholesterol/Glycerol Ratio
0.360000 2.67

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: