Rv1563c Malto-oligosyltrehalose synthase (EC 5.4.99.15)

Summary

Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv1563c treY Malto-oligosyltrehalose synthase (EC 5.4.99.15) CDS 1767135 1769432 - 2 298 765 FALSE

Rv1563c (Malto-oligosyltrehalose synthase (EC 5.4.99.15)) is predicted to be co-regulated in modules bicluster_0388 with residual 0.53 and bicluster_0584 with residual 0.50.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.05 for bicluster_0388 and 0.30 and 380.00 for bicluster_0584 respectively.

These modules are enriched for following go terms: nucleobase-containing compound biosynthe..., small molecule metabolic process, cellular nitrogen compound biosynthetic ....

This gene is found to be for growth on cholesterol.

Mutant available?: Yes

Last update: 10/16/2017 - 11:39
BEI Mutant Available BEI Mutant ID BEI MT Number BEI Target ID Order from BEI
Yes NR-13502 MT1614 184
Product (LegacyBRC) Product (RefSeq)
Putative maltooligosyl trehalose synthase maltooligosyltrehalose synthase TreY
Operon # Operon
1036 - - -
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics

PATRIC

Not assigned Not assigned
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

not assigned to any KEGG Pathway.
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
57116885 YP_177820.1 Run
GO:0047470

(1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity

(1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity

Details: 
Catalysis of the reaction: 4-[(1->4)-alpha-D-glucosyl](n-1)-D-glucose = 1-alpha-D-[(1->4)-alpha-D-glucosyl](n-1)-alpha-D-glucopyranoside.
GO Category: 
molecular_function
1
Total items in this category:  
GO:0047470

(1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity

(1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity

Details: 
Catalysis of the reaction: 4-[(1->4)-alpha-D-glucosyl](n-1)-D-glucose = 1-alpha-D-[(1->4)-alpha-D-glucosyl](n-1)-alpha-D-glucopyranoside.
GO Category: 
molecular_function
1
Total items in this category:  
No TFOE experiment results were found

Quantitative Proteomics Data

t-test p-value Cholesterol/Glycerol Ratio
0.960000 1.43

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: