Rv1956 Possible transcriptional regulatory protein

Rv1956 (Possible transcriptional regulatory protein) is predicted to be co-regulated in modules bicluster_0018 with residual 0.62 and bicluster_0090 with residual 0.37.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.55 and 25.00 for bicluster_0018 and 1,600.00 and 1,700.00 for bicluster_0090 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 11 - 20 of 22
Gene Target Differential Expression Distance Expression pvalue Type
No results were found NA -30 Primary.TSS
Induced -111 0.73 0.0291487 Primary.TSS
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
No 48 -0.05 0.76959 Primary.TSS
PROBABLE MEMBRANE PROTEIN
Repressed -22 -0.61 0.00183431 Primary.TSS
Glutamine synthetase type I (EC 6.3.1.2)
No -88 -0.16 0.661235 Primary.TSS
Phospholipase C 3 PlcC (EC 3.1.4.3)
No -126 0.47 0.0995724 CDS
No 30 -0.19 0.622957 CDS
ATPases involved in chromosome partitioning
No -37 0.29 0.40484 Internal.TSS
COG2071: predicted glutamine amidotransferases in hypothetical Actinobacterial gene cluster
No -101 0.12 0.46731 CDS
Monooxygenase, flavin-binding family
No 30 1.04 0.124077 Primary.TSS
not assigned to any KEGG Pathway.
GO:0001666

response to hypoxia

response to hypoxia

Details: 
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level.
GO Category: 
biological_process
37
Total items in this category:  
GO:0045926

negative regulation of growth

negative regulation of growth

Details: 
Any process that stops, prevents or reduces the rate or extent of growth, the increase in size or mass of all or part of an organism.
GO Category: 
biological_process
36
Total items in this category:  
GO:0045927

positive regulation of growth

positive regulation of growth

Details: 
Any process that activates or increases the rate or extent of growth, the increase in size or mass of all or part of an organism.
GO Category: 
biological_process
31
Total items in this category:  
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 14.12 U
D3I 3 3 3.83 13.97 I
D3U 3 3 3.83 13.97 U
D5I 9 5 6.00 13.82 I
D5U 17 5 6.00 13.64 U
D7I 18 7 8.14 14.26 I
D7U 19 7 8.14 13.85 U
D14I 4 14 15.63 13.98 I
D14U 4 14 15.63 13.52 U
D17I 3 17 19.15 13.64 I
D17U 3 17 19.15 13.16 U
D21I 4 21 23.23 13.70 I
D21U 4 21 23.23 13.44 U
D24I 3 24 26.60 13.23 I
D24U 3 24 26.60 13.09 U
D28I 4 28 30.61 13.34 I
D28U 4 28 30.61 13.18 U