Rv1985c HTH-type transcriptional regulator

Rv1985c (HTH-type transcriptional regulator) is predicted to be co-regulated in modules bicluster_0007 with residual 0.55 and bicluster_0380 with residual 0.52.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0007 and 0.07 and 0.10 for bicluster_0380 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 111 - 120 of 147
Gene Target Differential Expression Distance Expression pvalue Type
Citrate lyase beta chain (EC 4.1.3.6)
No -17 -0.22 0.353543 Primary.TSS
No -78 -0.16 0.757728 CDS
NADH:flavin oxidoreductases, Old Yellow Enzyme family
No -87 0.05 0.882747 CDS
Molybdenum cofactor biosynthesis protein MoaD
No -49 -0.17 0.71502 CDS
PPE family protein
No 54 -0.15 0.672075 Primary.TSS
No 54 -0.02 0.970988 Internal.TSS
No -41 -0.02 0.970988 CDS
Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-)
No -52 -0.06 0.959688 Primary.TSS
Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase
No 39 0.17 0.912624 Primary.TSS
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
No -63 0.65 0.582385 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 8.34 U
D7U 19 7 8.14 7.53 U
D7I 18 7 8.14 6.54 I
D5U 17 5 6.00 11.33 U
D5I 9 5 6.00 10.84 I
D14I 4 14 15.63 3.27 I
D14U 4 14 15.63 6.73 U
D21I 4 21 23.23 2.50 I
D21U 4 21 23.23 6.26 U
D28I 4 28 30.61 I
D28U 4 28 30.61 5.77 U
D17I 3 17 19.15 I
D17U 3 17 19.15 5.97 U
D24I 3 24 26.60 I
D24U 3 24 26.60 5.95 U
D3I 3 3 3.83 7.89 I
D3U 3 3 3.83 8.32 U