Rv2034 Transcriptional regulator, ArsR family

Rv2034 (Transcriptional regulator, ArsR family) is predicted to be co-regulated in modules bicluster_0120 with residual 0.55 and bicluster_0546 with residual 0.58.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.00 and 0.00 for bicluster_0120 and 0.00 and 0.21 for bicluster_0546 respectively.

These modules are enriched for following go terms: nucleic acid binding transcription facto..., sequence-specific DNA binding transcript... .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 131 - 140 of 150
Gene Target Differential Expression Distance Expression pvalue Type
Zn-dependent hydrolases, including glyoxylases
No -16 0.02 0.959529 CDS
Phosphoglucosamine mutase (EC 5.4.2.10)
No 28 -0.04 0.792706 Primary.TSS
POSSIBLE TRANSMEMBRANE PROTEIN
No -32 -0.11 0.760869 CDS
PROBABLE CONSERVED MEMBRANE PROTEIN
No -29 -0.12 0.565589 CDS
Repressed -139 -0.73 0.00312816 CDS
Probable acyl-CoA dehydrogenase FadE29 (EC 1.3.99.-); Acyl-CoA dehydrogenase IgrC
No -133 -0.11 0.722666 Primary.TSS
Probable acyl-CoA dehydrogenase FadE28 (EC 1.3.99.-); Acyl-CoA dehydrogenase IgrB
No -133 -0.26 0.146392 Internal.TSS
Histone protein Lsr2
No -42 0.16 0.511849 Primary.TSS
Epoxide hydrolase (EC 3.3.2.9)
No 27 -0.26 0.309155 Primary.TSS
Septum site-determining protein MinD @ possible CpaE
No 15 0.8 0.125465 Primary.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found

TRIP log2 fold abundance change

NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 10.48 U
D3I 3 3 3.83 10.74 I
D3U 3 3 3.83 10.88 U
D5I 9 5 6.00 8.69 I
D5U 17 5 6.00 10.11 U
D7I 18 7 8.14 6.93 I
D7U 19 7 8.14 9.41 U
D14I 4 14 15.63 2.80 I
D14U 4 14 15.63 9.76 U
D17I 3 17 19.15 I
D17U 3 17 19.15 9.50 U
D21I 4 21 23.23 2.16 I
D21U 4 21 23.23 9.28 U
D24I 3 24 26.60 I
D24U 3 24 26.60 9.11 U
D28I 4 28 30.61 I
D28U 4 28 30.61 8.90 U