Rv2604c Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
|Symbol||Product||Feature Type||Start||End||Strand||Length||AA Length||is TF|
|Rv2604c||snoP||Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)||CDS||2931693||2932289||-||597||198||FALSE|
Rv2604c (Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)) is predicted to be co-regulated in modules bicluster_0177 with residual 0.50 and bicluster_0444 with residual 0.53.
This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 3.10 and 110.00 for bicluster_0177 and 230.00 and 23,000.00 for bicluster_0444 respectively.
These modules are enriched for following go terms: glutamine metabolic process cellular component organization, cellular component biogenesis, cellular component organization or bioge....
This gene is found to be for growth on cholesterol.
|Product (LegacyBRC)||Product (RefSeq)|
|Glutamine amidotransferase subunit pdxT||glutamine amidotransferase subunit PdxT|
|BioCyc Gene Page||Cellular Overview Map|
|t-test p-value||Cholesterol/Glycerol Ratio|
How essentiality calculations were done?
The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.
reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.