Rv3488 Transcriptional regulator, PadR family

Rv3488 (Transcriptional regulator, PadR family) is predicted to be co-regulated in modules bicluster_0247 with residual 0.41 and bicluster_0340 with residual 0.51.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 430.00 and 9,100.00 for bicluster_0247 and 1,100.00 and 2,300.00 for bicluster_0340 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 81 - 90 of 91
Gene Target Differential Expression Distance Expression pvalue Type
PPE family protein
No 4 0.15 0.962221 Antisense.TSS
PPE family protein
No 5 -0.04 0.989163 Antisense.TSS
PE family protein
No -1 -0.2 0.962221 Primary.TSS
No -140 0.24 0.962221 Primary.TSS
Antigen 85-C precursor (85C) (Antigen 85 complex C) (Ag85C) (Mycolyl transferase 85C) (EC 2.3.1.-)
No -60 -0.28 0.962221 Primary.TSS
Exported repetitive protein precursor (Cell surface protein pirG) (EXP53)
No -26 0.01 0.997307 Primary.TSS
No 43 0.15 0.962221 CDS
Transcriptional regulator, AraC family
No -13 0.24 0.962221 CDS
Putative ESX-1 secretion system component Rv3869
No -73 -0.03 0.990033 Primary.TSS
FtsK/SpoIIIE family protein
No 6 0.06 0.965234 Internal.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.56 U
D3I 3 3 3.83 12.02 I
D3U 3 3 3.83 11.61 U
D5I 9 5 6.00 12.99 I
D5U 17 5 6.00 12.50 U
D7I 18 7 8.14 11.24 I
D7U 19 7 8.14 11.07 U
D14I 4 14 15.63 10.86 I
D14U 4 14 15.63 11.79 U
D17I 3 17 19.15 8.64 I
D17U 3 17 19.15 11.20 U
D21I 4 21 23.23 7.88 I
D21U 4 21 23.23 11.17 U
D24I 3 24 26.60 4.80 I
D24U 3 24 26.60 10.80 U
D28I 4 28 30.61 5.11 I
D28U 4 28 30.61 10.81 U