Rv3488 Transcriptional regulator, PadR family

Rv3488 (Transcriptional regulator, PadR family) is predicted to be co-regulated in modules bicluster_0247 with residual 0.41 and bicluster_0340 with residual 0.51.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 430.00 and 9,100.00 for bicluster_0247 and 1,100.00 and 2,300.00 for bicluster_0340 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 41 - 50 of 91
Gene Target Differential Expression Distance Expression pvalue Type
Glutamine synthetase type I (EC 6.3.1.2)
No 50 0.08 0.975071 Primary.TSS
Haloalkane dehalogenase (EC 3.8.1.5)
No -63 -0.16 0.962221 CDS
NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)
No 27 -0.14 0.962221 Internal.TSS
NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18)
No -33 -0.14 0.962221 CDS
Serine acetyltransferase (EC 2.3.1.30)
No -79 0.06 0.968003 Internal.TSS
Serine acetyltransferase (EC 2.3.1.30)
No -48 0.06 0.968003 CDS
DNA primase (EC 2.7.7.-)
Repressed -23 -0.71 0.000000177 Primary.TSS
Phospholipase C 3 PlcC (EC 3.1.4.3)
No -134 0.1 0.97031 CDS
Sulfate transport system permease protein CysT
No 32 -0.14 0.962221 Antisense.TSS
Adenylyl cyclase class-3/4/guanylyl cyclase / Disease resistance domain-containing protein / Tetratricopeptide repeat-containing protein / Transcriptional regulator, LuxR family
No -86 0.04 0.987476 Internal.TSS
not assigned to any KEGG Pathway.
No TFOE experiment results were found
TRIP log2 fold abundance change
NA
Displaying 1 - 17 of 17
Condition Count Day Doublings Fitness U.I Plots
D0U 27 0 0.00 11.56 U
D3I 3 3 3.83 12.02 I
D3U 3 3 3.83 11.61 U
D5I 9 5 6.00 12.99 I
D5U 17 5 6.00 12.50 U
D7I 18 7 8.14 11.24 I
D7U 19 7 8.14 11.07 U
D14I 4 14 15.63 10.86 I
D14U 4 14 15.63 11.79 U
D17I 3 17 19.15 8.64 I
D17U 3 17 19.15 11.20 U
D21I 4 21 23.23 7.88 I
D21U 4 21 23.23 11.17 U
D24I 3 24 26.60 4.80 I
D24U 3 24 26.60 10.80 U
D28I 4 28 30.61 5.11 I
D28U 4 28 30.61 10.81 U