Rv3628 Inorganic pyrophosphatase (EC 3.6.1.1)

Summary
Symbol Product Feature Type Start End Strand Length AA Length is TF
Rv3628 ppa Inorganic pyrophosphatase (EC 3.6.1.1) CDS 4067423 4067911 + 489 162 FALSE

Rv3628 (Inorganic pyrophosphatase (EC 3.6.1.1)) is predicted to be co-regulated in modules bicluster_0150 with residual 0.60 and bicluster_0501 with residual 0.59.

This regulation is possibly mediated by two de-novo identified cis-regulatory motifs in each module with e-values , 0.46 and 72.00 for bicluster_0150 and 14.00 and 11,000.00 for bicluster_0501 respectively.

These modules are enriched for following go terms: .

This gene is found to be for growth on cholesterol.

Mutant available?:

Displaying 1 - 1 of 1
Gene Target Differential Expression Distance Expression pvalue Type
No results were found
Displaying 1 - 1 of 1
ChipSeq TF Differential Expression Distance Expression pvalue Type
No results were found
Motif 1 Motif 2 Residual
bicluster_0150
e.value: 
0.46
Motif Bicluster: 
e.value: 
72
Motif Bicluster: 
0.60
bicluster_0501
e.value: 
14
Motif Bicluster: 
e.value: 
11000
Motif Bicluster: 
0.59
Product (LegacyBRC) Product (RefSeq)
Inorganic pyrophosphatase inorganic pyrophosphatase
Operon # Operon
2359
PATRIC Locus Tag Enzyme Name PATRIC Pathways Transcriptomics

PATRIC

Inorganic diphosphatase Oxidative phosphorylation
Locus Tuberculist Genome View

Tuberculist

Quickview
Locus Tag KEGG Pathways

KEGG

Oxidative phosphorylation

47
Total items in this category:  
BioCyc Gene Page Cellular Overview Map
Link to STRING STRING Network

STRING

GI Number Protein ID Blast Conserved Domains
15610764 NP_218145.1 Run
GO:0004427

inorganic diphosphatase activity

inorganic diphosphatase activity

Details: 
Catalysis of the reaction: diphosphate + H(2)O = H(+) + 2 phosphate.
GO Category: 
molecular_function
1
Total items in this category:  
GO:0000287

magnesium ion binding

magnesium ion binding

Details: 
Interacting selectively and non-covalently with magnesium (Mg) ions.
GO Category: 
molecular_function
52
Total items in this category:  
GO:0005829

cytosol

cytosol

Details: 
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
GO Category: 
cellular_component
371
Total items in this category:  
GO:0005886

plasma membrane

plasma membrane

Details: 
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
GO Category: 
cellular_component
1284
Total items in this category:  
Description:Expression data from transcription factor over expression experiments. TFOE are matched to the ChIP-seq experiment done simultaneously. This dataset is described in Rustad et al. 2014, Genome Biology.
Quantitative Proteomics Data
t-test p-value Cholesterol/Glycerol Ratio
NA NA

How essentiality calculations were done?

The relative representation of each mutant was determined by calculating the fold change (sequence reads/insertion in cholesterol divided by sequence reads/insertion in glycerol) for each gene. Statistical significance was determined by t-test. Each insertion site in each replicate sample was treated as a separate data point. The hyperbola used for defining genes specifically required for growth in cholesterol was defined by the formula, y = 3.8/x+0.7. Genes above this line are annotated as required for growth on cholesterol.

TRIP log2 fold abundance change

reports the log2 abundance fold change of each TFI strain, relative to no induction, in absence or presence of drug, averaged across experimental replicates. Also reported are the accompanying z-scores and two-sided t-test p-values for each TFI strain under each condition. Please refer to Ma et al., 2020, Nature Microbiology for more information.

p-value Untreated:
p-value INH: