Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Putative Xaa-Pro aminopeptidase (NCBI)
Functional Annotations (5)
|Xaa-Pro aminopeptidase||cog/ cog|
|X-Pro dipeptidase activity||go/ molecular_function|
|creatine metabolic process||go/ biological_process|
|creatinase activity||go/ molecular_function|
Regulation information for RSP_3444(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for RSP_3444
Module neighborhood information for RSP_3444
|Gene||Common Name||Description||Module membership|
|RSP_0088||RSP_0088||ycfI, putative structural proteins (NCBI)||73, 168|
|RSP_0219||RSP_0219||hypothetical protein (NCBI)||168, 220|
|RSP_0328||nnrS||hypothetical protein (NCBI)||168, 249|
|RSP_0470||RSP_0470||hypothetical protein (NCBI)||168, 249|
|RSP_0511||RSP_0511||two component transcriptional regulator, LuxR family (NCBI)||168, 176|
|RSP_0524||RSP_0524||hypothetical protein (NCBI)||74, 168|
|RSP_0801||RSP_0801||deacetylase / probable acetylpolyamine aminohydrolase (NCBI)||168, 242|
|RSP_0864||RSP_0864||Puative heme-binding hypothetical protein (NCBI)||168, 238|
|RSP_0947||RSP_0947||hypothetical protein (NCBI)||168, 213|
|RSP_0951||RSP_0951||hypothetical protein (NCBI)||168, 238|
|RSP_1210||RSP_1210||Response regulator receiver protein (NCBI)||73, 168|
|RSP_1300||RSP_1300||hypothetical protein (NCBI)||168, 303|
|RSP_1640||RSP_1640||hypothetical protein (NCBI)||168, 233|
|RSP_1655||RSP_1655||hypothetical protein (NCBI)||61, 83|
|RSP_2632||argI||Arginase (NCBI)||95, 168|
|RSP_2791||RSP_2791||hypothetical protein (NCBI)||168, 236|
|RSP_2957||RSP_2957||hypothetical protein (NCBI)||168, 213|
|RSP_3026||RSP_3026||Transcriptional regulator, MocR family (NCBI)||83, 168|
|RSP_3037||RSP_3037||Putative short-chain dehydrogenase/reductase (NCBI)||57, 168|
|RSP_3050||moaA||Molybdenum cofactor biosynthesis protein A (NCBI)||168, 308|
|RSP_3095||RSP_3095||sigma24 (NCBI)||168, 202|
|RSP_3096||RSP_3096||hypothetical protein (NCBI)||168, 304|
|RSP_3098||qoxB||QoxB, Quinol oxidase subunit II (NCBI)||168, 304|
|RSP_3137||RSP_3137||hypothetical protein (NCBI)||141, 168|
|RSP_3213||RSP_3213||hypothetical protein (NCBI)||168, 313|
|RSP_3257||RSP_3257||ABC peptide transporter, inner membrane subunit (NCBI)||168, 325|
|RSP_3343||RSP_3343||putative glycosyl transferase (NCBI)||14, 168|
|RSP_3406||pdxA||4-hydroxythreonine-4-phosphate dehydrogenase 2 (NCBI)||61, 342|
|RSP_3407||serA||D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding subunit (NCBI)||61, 337|
|RSP_3408||dapA||Dihydrodipicolinate synthetase (NCBI)||61, 337|
|RSP_3409||RSP_3409||TRAP-T family transporter, large (12 TMs) inner membrane subunit (NCBI)||61, 337|
|RSP_3410||RSP_3410||TRAP-T family transporter, periplasmic binding protein (NCBI)||61, 337|
|RSP_3411||RSP_3411||TRAP-T family transporter, small (4 TMs) inner membrane subunit (NCBI)||61, 337|
|RSP_3412||RSP_3412||Iron-containing alcohol dehydrogenase (NCBI)||61, 337|
|RSP_3443||RSP_3443||putative acetamidase/formamidase (NCBI)||61, 141|
|RSP_3444||RSP_3444||Putative Xaa-Pro aminopeptidase (NCBI)||61, 168|
|RSP_3445||RSP_3445||transcriptional regulator, GntR family (NCBI)||61, 342|
|RSP_3446||RSP_3446||Putative amino acid hydrolase (NCBI)||61, 168|
|RSP_3447||RSP_3447||Putative dehydrogenase (NCBI)||61, 168|
|RSP_3449||RSP_3449||Putative allophanate hydrolase subunit 2 (NCBI)||61, 84|
|RSP_3450||RSP_3450||hypothetical protein (NCBI)||61, 84|
|RSP_3451||RSP_3451||TRAP-T family transporter, large (12TMs) inner membrane subunit (NCBI)||61, 370|
|RSP_3452||RSP_3452||TRAP-T family transporter, small (4TMs) inner membrane subunit (NCBI)||4, 61|
|RSP_3453||RSP_3453||TRAP-T family transporter, periplasmic binding protein (NCBI)||4, 61|
|RSP_3454||RSP_3454||hypothetical protein (NCBI)||61, 112|
|RSP_3455||RSP_3455||D-alanine aminotransferase (NCBI)||61, 184|
|RSP_3456||RSP_3456||Putative dihydrodipicolinate synthase (NCBI)||61, 91|
|RSP_3497||RSP_3497||Caspase-1, p20 (NCBI)||103, 168|
|RSP_3566||RSP_3566||dimethylglycine dehydrogenase (NCBI)||27, 168|
|RSP_3681||stcD2||putative NADH-dependent oxidase (NCBI)||61, 143|
|RSP_3742||RSP_3742||ABC amino acid transporter, periplasmic binding protein (NCBI)||61, 346|
|RSP_3743||speB1||putative agmatinase (NCBI)||61, 292|
|RSP_3744||RSP_3744||ABC amino acid transporter, inner membrane subunit (NCBI)||61, 346|
|RSP_3745||RSP_3745||ABC amino acid transporter, ATPase subunit (NCBI)||61, 346|
|RSP_3746||RSP_3746||hypothetical protein (NCBI)||61, 292|
|RSP_3747||RSP_3747||putative dipeptidase (NCBI)||61, 346|
|RSP_3793||RSP_3793||hypothetical protein (NCBI)||73, 168|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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