Organism : Bacillus subtilis | Module List :
Regulation information for BSU07090(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BSU07090
|Gene||Common Name||Description||Module membership|
|BSU01990||ybdG||putative hydrolase/transferase (RefSeq)||89, 360|
|BSU02000||ybdJ||two-component response regulator [YbdK] (RefSeq)||312, 360|
|BSU02320||ybfP||putative transcriptional regulator (AraC/XylS family) (RefSeq)||8, 360|
|BSU03890||gabR||transcriptional regulator (GntR/MocR family) with PLP binding site (RefSeq)||175, 360|
|BSU05720||ydhE||putative glycosyltransferase (RefSeq)||285, 360|
|BSU05810||gmuB||oligo-α-mannoside phosphotransferase system enzyme IIB (RefSeq)||10, 143|
|BSU05820||gmuA||oligo-α-mannoside phosphotransferase system enzyme IIA (RefSeq)||10, 143|
|BSU05830||gmuC||oligo-alpha-mannoside phosphotransferase system enzyme IIC (RefSeq)||10, 143|
|BSU05840||gmuD||mannoside-phospho-beta-d-glucosidase (RefSeq)||10, 143|
|BSU05850||gmuR||transcriptional regulator (GntR family) (RefSeq)||71, 143|
|BSU05860||gmuE||putative carbohydrate kinase (RefSeq)||71, 143|
|BSU05870||gmuF||phosphohexomutase; cupin family (RefSeq)||71, 143|
|BSU05880||gmuG||exported mannan endo-1,4-beta-mannosidase (RefSeq)||10, 143|
|BSU06970||yesO||pectin degradation byproducts-binding lipoprotein (RefSeq)||143, 360|
|BSU06980||yesP||rhamnogalacturonan permease (RefSeq)||143, 360|
|BSU06990||yesQ||rhamnogalacturonan permease (RefSeq)||360, 371|
|BSU07000||yesR||rhamnogalacturonan hydrolase (RefSeq)||10, 360|
|BSU07010||yesS||transcriptional regulator (AraC/XylS family) (RefSeq)||143, 372|
|BSU07020||rhgT||rhamnogalacturonan acetylesterase (RefSeq)||143, 360|
|BSU07030||yesU||hypothetical protein (RefSeq)||143, 372|
|BSU07040||yesV||putative integral inner membrane component (RefSeq)||10, 360|
|BSU07050||yesW||polysaccharide lyase; lipoprotein (RefSeq)||360, 372|
|BSU07060||yesX||polysaccharide lyase (RefSeq)||360, 372|
|BSU07070||yesY||rhamnogalacturonan acetylesterase (RefSeq)||143, 372|
|BSU07080||yesZ||beta-galacturonidase (RefSeq)||143, 372|
|BSU07090||yetA||putative enzyme (RefSeq)||143, 360|
|BSU07100||lplA||lipoprotein (RefSeq)||143, 372|
|BSU07110||lplB||putative ABC transporter (permease) (RefSeq)||360, 372|
|BSU07120||lplC||putative ABC transporter (permease) (RefSeq)||143, 360|
|BSU08280||yfiI||putative oxidoreductase (RefSeq)||360, 371|
|BSU30100||yteT||putative dehydrogenase of rhamnogalaturonan degradation (RefSeq)||360, 371|
|BSU30110||yteS||putative lipoprotein required for rhamnogalaturonan degradation (RefSeq)||360, 371|
|BSU30120||yteR||unsaturated rhamnogalacturonyl hydrolase (RefSeq)||360, 371|
|BSU34190||yvfH||putative lactate permease (RefSeq)||330, 360|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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