Commensal vs germ free
Conditions
| Title | Description | Overall Design | Pubmed ID | Samples | Series ID | Summary | Type |
|---|---|---|---|---|---|---|---|
| Commensal vs germ free |
The in vivo responses elicited by Clostridium difficile in response to the gut commensal B. thetaiotaomicron and diet |
In vitro transcriptional profiles of Clostridium difficile obtained from cecal contents of germ-free or Bt-monocolonized mice on a standard, polysaccharide rich or polysaccharide deficient diet. 4 samples/group. 2 control genomic DNA samples for Clostridium difficile and 2 reference genomic DNA samples for Bacteroides thetaiotaomicron; ; Please note that 4 control samples (genomic DNA) were used to determine whether the genomic DNA correctly bound to the probes and thus, were not included in data processing (i.e no processed/normalized data). | GSM1487081 , GSM1487082 , GSM1487083 , GSM1487084 , GSM1487089 , GSM1487090 , GSM1487091 , GSM1487092 | GSE60751 | Analysis of Clostridium difficile (Cd) from the cecal contents of germ-free mice or Bacteroides thetaiotaomicron (Bt)-monocolonized mice on a standard, polysaccharide rich diet or polysaccharide deficient diet 5 days after infection. Results identify genes that are involved in the Cd response to diet, in vivo colonization and in interactions with Bt. | Expression profiling by array |