CD630_16920

Displaying 21 - 30 of 31

Below is a list of putative TF-module interactions that were predicted by using the algorithm, inferelator. Only the interactions with confidence scores in the top 10% of the non-zero scores were included.

1. Betas: correspond to the average coefficients of the Bayesian regressions between module expression and TF expression profiles. The values indicate the magnitude and direction (activation or repression for positive or negative values, respectively) of each TF-module interaction. 2. Confidence scores: indicate the likelihood of the TF-module interactions.

* Given that translation start was used to define the 3' end of putative promoters, some cis-regulatory motifs are likely to be ribosome binding sites (i.e., Shine-Dalgarno sequence). RBS is typically a six nucleotide sequence 5'-GGAGGA-3'.

Default Filter: > 0.1 (Absolute Beta)
TF Module Beta Confidence Score
CD630_16920 303 0.26 0.41
CD630_16920 307 0.14 0.32
CD630_16920 328 0.17 0.25
CD630_16920 333 0.17 0.25
CD630_16920 344 -0.21 0.28
CD630_16920 349 -0.60 0.69
CD630_16920 367 0.17 0.27
CD630_16920 377 0.25 0.31
CD630_16920 393 0.13 0.22
CD630_16920 400 0.28 0.38
Default filter: <= 0.05
Default filter: >4
CD630_16920 is not predicted to regulate any modules via hypergeometric test by using default filters

Functional

%1 doesn't have any functional assignment.