10402 DEAH_box_HrpB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10402 chr_16a DEAH_box_HrpB 238961 242393 + DEAH_box_HrpB

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0291

Most Highly Correlated Transcripts

261357

NAD_binding_8 superfamily
0.8943

263610

COG3899
0.8757

261056

(APB3) Adaptin_N
0.8746

5694

hypothetical protein
0.8744

262439

Bromodomain superfamily
0.8718

37362

MCM
0.8657

5788

TFIIS_M
0.8626

263019

PLN02818
0.858

1255

Nic96 superfamily
0.8578

8777

SPX
0.8573

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 86.2372 1.96E-19 125 - 262 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 86.2372 1.96E-19 125 - 262 superfamily 266587
HrpB_C superfamily ATP-dependent helicase C-terminal; This domain is found near the C-terminus of bacterial ATP-... - 148.375 2.42E-41 725 - 842 superfamily 254823
DEAH_box_HrpB ATP-dependent helicase HrpB; This model represents HrpB, one of two related but uncharacterized... - 370.641 1.39E-114 107 - 842 multi-dom 233660

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 146215 184229 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

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