1150 RsuA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1150 chr_1 RsuA 797518 798669 + RsuA

Synonyms

NCBI ID Ensembl Genomes exon ID
7453458 Thaps1150.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0295

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0036
 0.41

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9367

268443

SAICAR_synt_Sc
0.9214

8446

hypothetical protein
0.8993

6953

PRK11713
0.8923

39062

SpoU
0.8888

19158

GRX_PICOT_like
0.8762

1856

hypothetical protein
0.8629

264065

(cobA) PLN02625
0.8628

2018

HA
0.8624

957

WRN_exo
0.8606

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 128.766 8.29E-36 176 - 353 superfamily 260207
RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation,... - 164.723 6.03E-48 104 - 376 multi-dom 224108

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14856 PHATRDRAFT_14856 255019 310109 45202 Cre07.g323550.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004730 GO:0003723 GO:0006396 GO:0009982 -

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

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